Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02315 ATGAGGAGTCCTTCATCGTCAAAAGATGAAGCCAAATCAGCATCGACAAATTCAAAGAAGAACCAGAAGAGGAAGAATAGTAACAATGGAAGCAGCAGTACAACAAGTACTACCACTCCGTGTTGCAGTAAAATAGGGTTGAAGAGAGGACCATGGACAGGGGAAGAAGATCAAGTGTTATCGGATTACATTAAGAAGGAAGGTGAAGGCCGGTGGAGAACTCTCCCCAAACGAGCTGGCCTTCTCCGATGCGGCAAAAGCTGTCGTCTCCGTTGGATGAATTATCTCCGTCCGTCTGTCAAACGCGGCCAGATCGCCCCTGATGAAGAAGATCTCATTCTCCGTCTCCACCGTCTTCTCGGCAACAGGTGGTCATTGATAGCTGGAAGAATTCCAGGGAGAACTGATAATGAGATTAAGAATTATTGGAACACACATCTCAGCAAGAAACTCATTAATCAAGGAATTGATCCCAGAACACACAAGCCTCTTAATAATATTAATAACCCCTCTTCTTCATCTTCAATAATCCCAAATATTAATCACCAAACCACTTCTGCTTTTACATCTTCTGCTTCTCCAGATCATCATCATATTACTACTATAACTAACACTGAATCTGATCATAATCCCTCACCTCAAGATCATCACTTAGCTCAATATCACAATCATGATAATCATTATCCACAGCTGCAACAACAACAACAACGAGCTCAGGAGTTTAATGGTGCTGATTGTGATAGCTTATTTAGTAGTCATGTTTCTGCAATGGATCATCATCTGCTTAACAACAACAGTAAAGGGGATTATGATGACAGTAGTGTCTGTTGTGATGATGTGTTTACTTCATTCCTTGATTCATTGATCAACGAGGATGCATATGCTACACACCGATCTGAGAATGATCCTTTGAACTTGTCTGCTGCACCACCGTCTTTGTGGGAATCGCCACTCGTCAATATGTCTACTCTTATTTCCACAAAAAACCATGACGACTCACCCAAGACGGGACAGATTCATGATGCATAA 1029 0.4189 MRSPSSSKDEAKSASTNSKKNQKRKNSNNGSSSTTSTTTPCCSKIGLKRGPWTGEEDQVLSDYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNNINNPSSSSSIIPNINHQTTSAFTSSASPDHHHITTITNTESDHNPSPQDHHLAQYHNHDNHYPQLQQQQQRAQEFNGADCDSLFSSHVSAMDHHLLNNNSKGDYDDSSVCCDDVFTSFLDSLINEDAYATHRSENDPLNLSAAPPSLWESPLVNMSTLISTKNHDDSPKTGQIHDA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02315 342 MobiDBLite consensus disorder prediction 1 42 - -
Vifa2g02315 342 Gene3D - 49 101 - -
Vifa2g02315 342 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Vifa2g02315 342 FunFam transcription repressor MYB5-like 106 174 - -
Vifa2g02315 342 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Vifa2g02315 342 CDD SANT 51 96 IPR001005 -
Vifa2g02315 342 FunFam Myb transcription factor 46 102 - -
Vifa2g02315 342 MobiDBLite consensus disorder prediction 186 220 - -
Vifa2g02315 342 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 39 232 - -
Vifa2g02315 342 MobiDBLite consensus disorder prediction 20 42 - -
Vifa2g02315 342 CDD SANT 107 147 IPR001005 -
Vifa2g02315 342 Gene3D - 106 174 - -
Vifa2g02315 342 Pfam Myb-like DNA-binding domain 106 147 IPR001005 -
Vifa2g02315 342 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Vifa2g02315 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Vifa2g02315 342 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Vifa2g02315 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Vifa2g02315 342 SMART sant 48 98 IPR001005 -
Vifa2g02315 342 SMART sant 101 149 IPR001005 -
Vifa2g02315 342 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02315 Vifa-Chr2 598633258 598634428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02315 27 306 MYB Transcription Factor Family AT3G13540 50.352 2.18e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g02315 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02315 K09422 - pvy:116139454 303.138