Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02312 ATGGAGGAAACAATGGCGACTAGATATTGGTGTCACGTGTGTTCTCAAATAGTCAGCCCTATCATGGGAATGGAGATGAAATGTTCGGTTTGCCAGAGTGGATTTATTGAAGAAATGAGCAGTGCCACTGGTATCAATGACTTTCAAAATATACCGGATACTGATTTTGGATCGGATCGTTCTCCATCCCTTTGGGCACCAATCTTGCTAGGCATGATGGGCAATCCGCGGCTTCGTCGAAGATTGAGACGAATGGAACTTGAAGAGGACTATGATAGTGGGAATCACGATGATGATAGGGGTAATGGTGGTGTAGGACATTATGATCGAGAGCTTGAGTCTATCCTTCGAAGGAGGAGAAGAAGTTCTGCTACTATTCAGCAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAGTCACATGAGAATACTGATAGGGAGGATCGTGTTAGGGAAAGAGAAAGAGAGCATGTAATCTTGATTAACCCTTTTAATCAGACTATTATCGTTCAAGGTTCTTATGATTCAAACCGGGATCAAAGTGATAATCATAACCCCATAGGATCTTTGGGTGACTATTTCGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGATAATGACCCTAATAGGTATGGAACTCCACCTGCACCAAAGGAAGCCGTTGAAGCTTTACCAACTGTAAAAATCAATGAGAATATGCAGTGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCCGATGCTAAAGAGATGCCATGTAAACATAGCTTTCATACTGCTTGTATCCTTCCCTGGTTGGAGCTTCATAGTTCTTGTCCGGTTTGTAGATCTCAATTGCGAGTGGATGAACCTAAGCAAAACTCTAATGTGTCAAGGAATAACAGAAATCAAAGGGAGAATGATAATATTGGACATGCCAATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAAGCGGGGGTAGAAGATTCTCATTCCCATGGCCTTTCAACGGATTATTTTCATCATCATCGTCGTCTTCTAGTTCAAATGCAAATGGAAACAATACTCAACCAGAAAGAAACTGA 1077 0.4197 MEETMATRYWCHVCSQIVSPIMGMEMKCSVCQSGFIEEMSSATGINDFQNIPDTDFGSDRSPSLWAPILLGMMGNPRLRRRLRRMELEEDYDSGNHDDDRGNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSESHENTDREDRVREREREHVILINPFNQTIIVQGSYDSNRDQSDNHNPIGSLGDYFVGPGLDLLLQHLSDNDPNRYGTPPAPKEAVEALPTVKINENMQCSVCLDDFEVGSDAKEMPCKHSFHTACILPWLELHSSCPVCRSQLRVDEPKQNSNVSRNNRNQRENDNIGHANAEGDSEGRSPSGGRRFSFPWPFNGLFSSSSSSSSSNANGNNTQPERN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02312 358 MobiDBLite consensus disorder prediction 333 358 - -
Vifa2g02312 358 MobiDBLite consensus disorder prediction 287 358 - -
Vifa2g02312 358 Pfam Ring finger domain 238 280 IPR001841 -
Vifa2g02312 358 SUPERFAMILY RING/U-box 228 291 - -
Vifa2g02312 358 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Vifa2g02312 358 FunFam E3 ubiquitin-protein ligase RING1-like 206 286 - -
Vifa2g02312 358 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Vifa2g02312 358 CDD RING-H2_RNF126-like 238 280 - -
Vifa2g02312 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 285 IPR013083 -
Vifa2g02312 358 MobiDBLite consensus disorder prediction 287 301 - -
Vifa2g02312 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 283 - -
Vifa2g02312 358 SMART ring_2 239 279 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02312 Vifa-Chr2 597118497 597119573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02312 136 286 C3H Transcription Factor Family AT1G26800 35.948 1.05e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02312 - K11982 aip:107625235 456.447