Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02299 ATGGTGACTATACCCGACTTTGAAGAAGCTGTTGAGGCACCAGTTTCACCTCCTGATGTGCTGCCTACTATGGAAACGGAACAAATAGCTCTCCCAACTTCTTCTATTATCTGTAGGCCCGGTGTTGGTACCACAGGAAAACACATACCTTTGCTTACAAATCTCTTCAAAGTTGCAGCTGATGCTACAGATGCAATCTTTTTCCAGTATAGCGTTACTATCACTTCGGAAGATAAAAGAGTTGTTGAAAGCAAGGGCTTCGGGAGAAAAGTGATTGATAGGCTTCACCAAACATACTCCTCTGAACTTGGTGGCAAAAGCTTTGTGTATGATGGAGAAAGAACATTGTACACGGTGGGTCCTCTTCCAGATAATAAGTTTGAGTTCAAAGTTCTACTTGAAGAAACATTTTCATTTCCAAAGGGTACTGAGAGACCCGGTGTTAATGGAACCCCTTGTGAGGAAAATAAAAGGACAAAGTGTTCTTTTCAGTCAAAGGCATTCACAGTGGAGATAAGTTTTGCTGCCAAAATACCCTTGCAGTCCATTGCTCTTTCCCTTAAAGGGATTGAGTCATATGCAAATTCTCAAGATGCATTGAGGGTGCTTAATATCATACTGAGGCAGCGAGCAGCCAATAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGGTGACTCGAGGGATATCATTGATGTTGGAGGCGGAGTAACTGGTGTACGCGGTTTTCATTCCAGTTTTCGTCTTACACAAGGAGGATTGTCTCTTAATAAGGATGTGGCCACAACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACACACCAGAATGTGAGGGAAACTCGTCATATTAACTGGGCAAAGGCCAAGAGGATCCTTAAAAATTTAAGAGTTCGTGCTACACATCGTAACCAAGAATTCAAAATTGCTGGCTTCAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGATAAAGAATGGAGAAGACAATAATACAGAGCAGACAGTGGATCTTACAGTATATGATTATTTTGCTAAACACCACGACATTGAGCTGACCTCTTCTACTTACCTTCCTTGTCTTGATGTTGGGAAGCCAAATCGGCCAATCTTTTTGCCCCTGGAGCTATGTACACTTGTTCCCCTCCAGAGGTATAGAAAGGCATTATCTCCTGTGCAAAAAGCATCTTTAGTAGAACAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGAAATTCTTGCTATGAAGATGATACTGTTCTTGCGGCATGTGGCATTTCTATTGACAAACAATTCACTCCAGTTGATGGTCGAGTTCTTGAGACACCAAAGTTGAAGGTAGGTAAGAATGAAGACTGCTTTCCCAATAATGGAAGATGGAACTTTAAAAAAAAGACACTTCTAGAACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAATATGTGATACTAGTTTTATAACGAGAGAGCTGATTAAATGTGGAATGAGCAAGGGAATGAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGCACAGACGAGAAAACTTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTACTGATATCAAAACTTACTAGAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGTCTGTGTGAAGCTGGGGTTGTCACACAGTGCATTTCCCCTCTCAAGATAACTGATCAATACCTTACTAACGTGCTTCTTAAAATCAATTCTAAGCTCGGAGGAATAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTTCCCTTTATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCAATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGCTGGCCTCTAATTTCGAGGTATAGAGCATCCGTGAGATCCCAGTCACCTAAGGTGGAAATGATTGATGCTCTATACCAGCCTTTGGATGATGGGAATGATGATGGCATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCTTGTAATAGACGCAAGCCAACCCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGGTGTTGAATATAGAGGTTAACCAGATAATAAAGGCTTATAAACATATTGGGGAGGATGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAAAATCACCATACAAAGATGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAAAAATTATGATTTCTACATGTGCGCTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATTGGATTCTCGCCAGATGGCTTGCAAAATTTGATCAATTCGCTATCTTACGTGAACCAAAGGAGCACTACTGCAACTTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAAATGGCACAGTTTCTGAATTTCGATGATTTATCAGAGAGTAACATCCCCATTCCAGAGCTTCCTAGGTTGCATAAGAATGTCAGGACCTCCATGTTCTTCTGTTGA 2679 0.4084 MVTIPDFEEAVEAPVSPPDVLPTMETEQIALPTSSIICRPGVGTTGKHIPLLTNLFKVAADATDAIFFQYSVTITSEDKRVVESKGFGRKVIDRLHQTYSSELGGKSFVYDGERTLYTVGPLPDNKFEFKVLLEETFSFPKGTERPGVNGTPCEENKRTKCSFQSKAFTVEISFAAKIPLQSIALSLKGIESYANSQDALRVLNIILRQRAANRGCLLVRQSFFHGDSRDIIDVGGGVTGVRGFHSSFRLTQGGLSLNKDVATTMIVKPGPVIDFLLTHQNVRETRHINWAKAKRILKNLRVRATHRNQEFKIAGFSEKPCIQQLFSMKIKNGEDNNTEQTVDLTVYDYFAKHHDIELTSSTYLPCLDVGKPNRPIFLPLELCTLVPLQRYRKALSPVQKASLVEQSRQKPQERIKILTNAIGNSCYEDDTVLAACGISIDKQFTPVDGRVLETPKLKVGKNEDCFPNNGRWNFKKKTLLEPSHIDYWAVVNFSAICDTSFITRELIKCGMSKGMNIERPYTLIEEEAQTRKLNPVARVEKMFDLLISKLTREPKLILCVLPERKNCDIYGPWKRKCLCEAGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPFIKDTPTMILGMDVSHGSPGQSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALYQPLDDGNDDGIIRELLLDFYSSCNRRKPTQIILFRDGVSESQFNQVLNIEVNQIIKAYKHIGEDDVPKFTVIVAQKNHHTKMFQANALENVPPGTVVDTKIVHPKNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLSYVNQRSTTATSIVAPICYAHHAAAQMAQFLNFDDLSESNIPIPELPRLHKNVRTSMFFC 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02299 892 SMART Piwi_a_2 556 864 IPR003165 GO:0003676
Vifa2g02299 892 ProSiteProfiles Piwi domain profile. 556 864 IPR003165 GO:0003676
Vifa2g02299 892 SMART PAZ_2_a_3 272 412 IPR003100 GO:0005515
Vifa2g02299 892 CDD PAZ_argonaute_like 269 386 - -
Vifa2g02299 892 Pfam Piwi domain 556 863 IPR003165 GO:0003676
Vifa2g02299 892 ProSiteProfiles PAZ domain profile. 297 387 IPR003100 GO:0005515
Vifa2g02299 892 Gene3D - 623 892 IPR036397 GO:0003676
Vifa2g02299 892 Gene3D - 451 617 - -
Vifa2g02299 892 SUPERFAMILY Ribonuclease H-like 548 862 IPR012337 -
Vifa2g02299 892 CDD Piwi_ago-like 431 851 IPR045246 -
Vifa2g02299 892 Gene3D paz domain 263 391 - -
Vifa2g02299 892 Pfam Argonaute linker 2 domain 413 458 IPR032472 -
Vifa2g02299 892 SMART DUF1785_2 217 269 IPR014811 -
Vifa2g02299 892 FunFam Protein argonaute 3 624 892 - -
Vifa2g02299 892 SUPERFAMILY PAZ domain 264 424 IPR036085 GO:0005515
Vifa2g02299 892 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 866 - -
Vifa2g02299 892 Pfam PAZ domain 273 402 IPR003100 GO:0005515
Vifa2g02299 892 FunFam Protein argonaute 7 264 391 - -
Vifa2g02299 892 Pfam N-terminal domain of argonaute 47 207 IPR032474 -
Vifa2g02299 892 Pfam Argonaute linker 1 domain 219 267 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02299 Vifa-Chr2 595096813 595104265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02299 39 892 Eukaryotic Initiation Factors Gene Family AT1G48410 35.016 1.60e-151 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02299 K11593 - gmx:100778875 1357.04