Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02298 ATGGTGACTATACCCGACTTTGAAGAAGCTGTTGAGGCACCAGTTTCACCTCCTGATGTGCTGCCTACTATGGAAACGGAACAAATAGCTCTCCCAACTTCTTCTATTATCTGTAGGCCCGGTGTTGGTACCACAGGAAAACACATACCTTTGCTTACAAATCTCTTCAAAGTTGCAGCTGATGCTACAGATGCAATCTTTTTCCAGTATAGCGTTACTATCACTTCGGAAGATAAAAGAGTTGTTGAAAGCAAGGGCTTCGGGAGAAAAGTGATTGATAGGCTTCACCAAACATACTCCTCTGAACTTGGTGGCAAAAGCTTTGTGTATGATGGAGAAAGAACATTGTACACGGTGGGTCCTCTTCCAGATAATAAGTTTGAGTTCAAAGTTCTACTTGAAGAAACATTTTCATTTCCAAAGGGTAGTACTGAGAGACCCGGTGTTAATGGAACCCCTTGTGAGGAAAATAAAAGGACAAAGTGTTCTTTTCAGTCAAAGGCATTCACAGTGGAGATAAGTTTTGCTGCCAAAATACCCTTGCAGTCCATTGCTCTTTCCCTTAAAGGGATTGAGTCATATGCAAATTCTCAAGATGCATTGAGGGTGCTTAATATCATACTGAGGCAGCGAGCAGCCAATAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGGTGACTCGAGGGATATCATTGATGTTGGAGGCGGAGTAACTGGTGTACGCGGTTTTCATTCCAGTTTTCGTCTTACACAAGGAGGATTGTCTCTTAATAAGGATGTGGCCACAACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACACACCAGAATGTGAGGGAAACTCGTCATATTAACTGGGCAAAGGCCAAGAGGATCCTTAAAAATTTAAGAGTTCGTGCTACACATCGTAACCAAGAATTCAAAATTGCTGGCTTCAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGATAAAGAATGGAGAAGACAATAATACAGAGCAGACAGTGGATCTTACAGTATATGATTATTTTGCTAAACACCACGACATTGAGCTGACCTCTTCTACTTACCTTCCTTGTCTTGATGTTGGGAAGCCAAATCGGCCAATCTTTTTGCCCCTGGAGCTATGTACACTTGTTCCCCTCCAGAGGTATAGAAAGGCATTATCTCCTGTGCAAAAAGCATCTTTAGTAGAACAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGAAATTCTTGCTATGAAGATGATACTGTTCTTGCGGCATGTGGCATTTCTATTGACAAACAATTCACTCCAGTTGATGGTCGAGTTCTTGAGACACCAAAGTTGAAGGTAGGTAAGAATGAAGACTGCTTTCCCAATAATGGAAGATGGAACTTTAAAAAAAAGACACTTCTAGAACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAATATGTGATACTAGTTTTATAACGAGAGAGCTGATTAAATGTGGAATGAGCAAGGGAATGAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGCACAGACGAGAAAACTTAACCCTGTTGCAAGGGTTGAAAAGATGTTTGACCTACTGATATCAAAACTTACTAGAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGTCTGTGTGAAGCTGGGGTTGTCACACAGTGCATTTCCCCTCTCAAGATAACTGATCAATACCTTACTAACGTGCTTCTTAAAATCAATTCTAAGCTCGGAGGAATAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTTCCCTTTATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCAATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGCTGGCCTCTAATTTCGAGGTATAGAGCATCCGTGAGATCCCAGTCACCTAAGGTGGAAATGATTGATGCTCTATACCAGCCTTTGGATGATGGGAATGATGATGGCATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCTTGTAATAGACGCAAGCCAACCCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGGTGTTGAATATAGAGGTTAACCAGATAATAAAGGCTTATAAACATATTGGGGAGGATGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAAAATCACCATACAAAGATGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAAAAATTATGATTTCTACATGTGCGCTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATTGGATTCTCGCCAGATGGCTTGCAAAATTTGATCAATTCGCTATCTTACGTGAACCAAAGGAGCACTACTGCAACTTCAATTGTGGCACCTATATGCTATGCCCACCATGCTGCAGCTCAAATGGCACAGTTTCTGAATTTCGATGATTTATCAGAGAGTAACATCCCCATTCCAGAGCTTCCTAGGTTGCATAAGAATGTCAGGACCTCCATGTTCTTCTGTTGA 2682 0.4083 MVTIPDFEEAVEAPVSPPDVLPTMETEQIALPTSSIICRPGVGTTGKHIPLLTNLFKVAADATDAIFFQYSVTITSEDKRVVESKGFGRKVIDRLHQTYSSELGGKSFVYDGERTLYTVGPLPDNKFEFKVLLEETFSFPKGSTERPGVNGTPCEENKRTKCSFQSKAFTVEISFAAKIPLQSIALSLKGIESYANSQDALRVLNIILRQRAANRGCLLVRQSFFHGDSRDIIDVGGGVTGVRGFHSSFRLTQGGLSLNKDVATTMIVKPGPVIDFLLTHQNVRETRHINWAKAKRILKNLRVRATHRNQEFKIAGFSEKPCIQQLFSMKIKNGEDNNTEQTVDLTVYDYFAKHHDIELTSSTYLPCLDVGKPNRPIFLPLELCTLVPLQRYRKALSPVQKASLVEQSRQKPQERIKILTNAIGNSCYEDDTVLAACGISIDKQFTPVDGRVLETPKLKVGKNEDCFPNNGRWNFKKKTLLEPSHIDYWAVVNFSAICDTSFITRELIKCGMSKGMNIERPYTLIEEEAQTRKLNPVARVEKMFDLLISKLTREPKLILCVLPERKNCDIYGPWKRKCLCEAGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPFIKDTPTMILGMDVSHGSPGQSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALYQPLDDGNDDGIIRELLLDFYSSCNRRKPTQIILFRDGVSESQFNQVLNIEVNQIIKAYKHIGEDDVPKFTVIVAQKNHHTKMFQANALENVPPGTVVDTKIVHPKNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSPDGLQNLINSLSYVNQRSTTATSIVAPICYAHHAAAQMAQFLNFDDLSESNIPIPELPRLHKNVRTSMFFC 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02298 893 CDD PAZ_argonaute_like 270 387 - -
Vifa2g02298 893 SMART Piwi_a_2 557 865 IPR003165 GO:0003676
Vifa2g02298 893 Gene3D paz domain 264 392 - -
Vifa2g02298 893 SMART PAZ_2_a_3 273 413 IPR003100 GO:0005515
Vifa2g02298 893 SMART DUF1785_2 218 270 IPR014811 -
Vifa2g02298 893 Gene3D - 624 893 IPR036397 GO:0003676
Vifa2g02298 893 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 867 - -
Vifa2g02298 893 FunFam Protein argonaute 3 625 893 - -
Vifa2g02298 893 SUPERFAMILY Ribonuclease H-like 549 863 IPR012337 -
Vifa2g02298 893 Gene3D - 452 618 - -
Vifa2g02298 893 Pfam Piwi domain 557 864 IPR003165 GO:0003676
Vifa2g02298 893 ProSiteProfiles Piwi domain profile. 557 865 IPR003165 GO:0003676
Vifa2g02298 893 Pfam N-terminal domain of argonaute 47 208 IPR032474 -
Vifa2g02298 893 ProSiteProfiles PAZ domain profile. 298 388 IPR003100 GO:0005515
Vifa2g02298 893 Pfam Argonaute linker 2 domain 414 459 IPR032472 -
Vifa2g02298 893 FunFam Protein argonaute 7 265 392 - -
Vifa2g02298 893 CDD Piwi_ago-like 432 852 IPR045246 -
Vifa2g02298 893 Pfam PAZ domain 274 403 IPR003100 GO:0005515
Vifa2g02298 893 Pfam Argonaute linker 1 domain 220 268 IPR014811 -
Vifa2g02298 893 SUPERFAMILY PAZ domain 265 425 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02298 Vifa-Chr2 595096813 595104265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02298 39 893 Eukaryotic Initiation Factors Gene Family AT1G48410 35.088 2.97e-151 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02298 K11593 - gmx:100778875 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02298 2 595096813 595104265 Vifa2g02298 2 595096813 595104265 ECH
Vifa4g03551 4 1115471172 1115475621 Vifa2g02298 2 595096813 595104265 PCT