Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02285 ATGAATAAAAGAAAAGATGGAAGGAAGAAGTTCCATGAGACAAGACACCCAATATACAAAGGAGTGAGACAAAGAAACGGAAAATGGGTGTGTGAGTTACGACAACCTAACACCAAAACTCGTCGTGTTTGGCTTGGAACATTTTCTCACCCGGACATGGCAGCTAAAGCTTATGATGTTGCAGCTTTAGCTTTTAGAGGTGAAGCTGCTTCCTTAAATTTCCCTAACTCAGCTTCATCTTTGCCGCGTCTTAGTGCACAAACTTCTTCTATTAGGTCGATTCAGTTTGCCGCAACGAAAGCGGCTGAAAAACACTTCTCTTCACGTGAAGGCTATGAACCATTCTTTACTGCCGAGACAGTAAAGAATGATTCAGAGTCTTTAAATTGTGTTTCTGATGTTAACGTTTGCATGGGGGAAGATTCTGGAAGATTGTTTTGGGACGAGGAGGAGGTTTTCAACATGCCGGGTTTGATAAACAGCATGGCAGAAGGGTTGATTATCACACCGCCGGCTTTGCAGAGAGGTTTCAATTGGGTTGATGGAGAAACTACAGTGGACTTAACTTTATGGAAAAGTTGA 582 0.4244 MNKRKDGRKKFHETRHPIYKGVRQRNGKWVCELRQPNTKTRRVWLGTFSHPDMAAKAYDVAALAFRGEAASLNFPNSASSLPRLSAQTSSIRSIQFAATKAAEKHFSSREGYEPFFTAETVKNDSESLNCVSDVNVCMGEDSGRLFWDEEEVFNMPGLINSMAEGLIITPPALQRGFNWVDGETTVDLTLWKS 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02285 193 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vifa2g02285 193 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vifa2g02285 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 192 IPR045277 GO:0003700
Vifa2g02285 193 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vifa2g02285 193 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Vifa2g02285 193 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vifa2g02285 193 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vifa2g02285 193 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vifa2g02285 193 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02285 Vifa-Chr2 593068472 593069053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02285 3 191 AP2-EREBP Transcription Factor Family AT4G25490 46.701 2.36e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g02285 AP2 8.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02285 - - gmx:100778541 270.011