Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02283 ATGGAAGCAAAGAAAGAAGCGCTTAAAGCGATAGAGAATGCGGAGAAAAGGTTTGCTCATAGAGATTTTGTTGGAGCAAAAAGTTACGCCTTAAAAGCGAAAACATTGTGTCCTGGATTGGAGGGTATATCTCAGTTGGTGACCACTTTTGAAGTTTACATTGCCTCTCAAGTTAGTTGTAATGGTGAACTAGATTGGTATTCTATTATGGGGTTAAAACCTTCGACGGATATAGAAGCTGTGAAGAAACAGTACAAGAAGATGGCGGAGTTGCTTCATCCTGATAATAATAAGTGTGTTGGAGCTGATGGGGCGTTTCATCTTGTTTCTGAGGCATGGGCCAGGCTGTCTGGTGGTTATGATATGAAGAGGAATGTGCAGTTGGGTGCTGGGCATGGACTTAATCACAATGGTTTGTCGACTGCTCGTGCCTCTGGTGGTAATCAGGAGACTTTTTGGACAATTTGTACTTCTTGCAAGGTTCAGTATGAGTATCTGCGCAAGTATATAAATAAGAAACTTTCTTGTAAAAATTGCCGTGGGATTTTTATTGCTGTCGAAACAGCCCCGGCAAATGGGTCATTCCCTTACTGTCCTTGGTCGTATGCGTCTAGCAGTGGTTATGGAAGCCATTCGTATGAGGGAGTTGCATATGCTCCCAGTAATGGCACCTATTTCAACGGAAATGGGGTTACCGGACACCATTTGGGACACGGGTATGTTTCTAATGTTCCTTATCAATTGAACTCTGCTGGATACGTCAATCAAAATGGATCATCTACGTCACCTACTTGTCAGGCCAATGGGAATGTAAAGCGGGGAAGACCAAAAGTTAAATCAGAAGCTGATATGAAGCATTGCATGACAGAGACATTGGTTAATATAAATTCAGTTGTATCATTCTCCCAGAATGAACCGCAAGAGGTTAAGCCGAGTAGACCTGAGAAGAAAAGGAAAGTTCTTGCAGCCAGTTTAAGAATTGGCCATGAAGGAAAGGGTTCAAAATGTGCTTCAGAGTCAACATTGGCTAATGGGAATGGAAGCGTTGGGCATTGCCAGAAGCTTTCCAGTACAAATGAAGTTCCAACCAAACAGTATTCCATGGCACCAGGTTTTGATGCAAGAAAATTATTAATCGAGAAGGCCAGGACAGAAATAAGGAAAAAACTGGAAGAGATGAAGTTGGCATCTGAAGCTGCAGCTGCTGTTAATGAGAGAAAAAAGTCTCAAGCTGATGTTGGTCAGGTCAAAGGAGGTGCATACATTAAAGCAGCTGTTAATGTTTCTGATAACCAGTTGGAACTTAGGAAAACTGTTCCAGTGACAATTACTGTCCCAGATTCTGACTTTCATGATTTCGATAAAGATAGGTCAGAGCCATGCTTCAAACCAAAGCAAATATGGGCCTTGTATGATGAGGAGGACGGAATGCCCCGCTTGTATTGTCTGATCCGCGAGGTTGTCTCTGTCAATCCATTTAAGATTAACATAAGTTACTTGAGTTCGAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGTTTCAGGTTTCACTAAATCCTGTGGAAATTTCAGGGCCATGACCTCTGATGTTGTTGACCAAGTTAACATTTTTTCTCATGTTCTAAGCAGGGTGAAGGCCGGTCGAGGCGGCTGTGTTCGCATATATCCTAAATGCGGAGAAATTTGGGCTGTTTACAGAAACTGGTCTACAGATTGGAATCATTTGACATCAAATGAGGTAAGGCATCAGTATGATATGGTGGAGGTGTTGGATGATTATTCCGAGGAGCTTGGTCTTTGTGTTAGCCCCCTTATTAAGTTGGATGGATTCAAAACCGTGTACAAGAGGAATGCAGACAAAAGTGCCATTAGATGGATACCAAGAAAAGAAATGCTGCGTTTTTCGCACCAAGTGCCTTCGTGGTTGTTGAAGGGTGAGGAAGCAAGCAATTTGCCCGACAAGTGTTGGGACCTTGATCCAGCTGCAACTCCCGATGAATTCCTTCATGCTGCTATAGAAACAAACGCTTCCTAG 2040 0.4275 MEAKKEALKAIENAEKRFAHRDFVGAKSYALKAKTLCPGLEGISQLVTTFEVYIASQVSCNGELDWYSIMGLKPSTDIEAVKKQYKKMAELLHPDNNKCVGADGAFHLVSEAWARLSGGYDMKRNVQLGAGHGLNHNGLSTARASGGNQETFWTICTSCKVQYEYLRKYINKKLSCKNCRGIFIAVETAPANGSFPYCPWSYASSSGYGSHSYEGVAYAPSNGTYFNGNGVTGHHLGHGYVSNVPYQLNSAGYVNQNGSSTSPTCQANGNVKRGRPKVKSEADMKHCMTETLVNINSVVSFSQNEPQEVKPSRPEKKRKVLAASLRIGHEGKGSKCASESTLANGNGSVGHCQKLSSTNEVPTKQYSMAPGFDARKLLIEKARTEIRKKLEEMKLASEAAAAVNERKKSQADVGQVKGGAYIKAAVNVSDNQLELRKTVPVTITVPDSDFHDFDKDRSEPCFKPKQIWALYDEEDGMPRLYCLIREVVSVNPFKINISYLSSKTDSEFGSVNWLVSGFTKSCGNFRAMTSDVVDQVNIFSHVLSRVKAGRGGCVRIYPKCGEIWAVYRNWSTDWNHLTSNEVRHQYDMVEVLDDYSEELGLCVSPLIKLDGFKTVYKRNADKSAIRWIPRKEMLRFSHQVPSWLLKGEEASNLPDKCWDLDPAATPDEFLHAAIETNAS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02283 679 Pfam DnaJ domain 65 117 IPR001623 -
Vifa2g02283 679 Gene3D DnaJ domain 53 120 IPR036869 -
Vifa2g02283 679 SUPERFAMILY Chaperone J-domain 58 118 IPR036869 -
Vifa2g02283 679 Coils Coil 379 399 - -
Vifa2g02283 679 CDD DnaJ 65 117 IPR001623 -
Vifa2g02283 679 PANTHER BNAC03G44070D PROTEIN 3 666 - -
Vifa2g02283 679 MobiDBLite consensus disorder prediction 259 281 - -
Vifa2g02283 679 SMART dnaj_3 64 121 IPR001623 -
Vifa2g02283 679 Pfam Domain of unknown function (DUF3444) 442 649 IPR024593 -
Vifa2g02283 679 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02283 Vifa-Chr2 592870417 592872456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02283 4 277 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.571 3.19e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02283 - - gmx:100788692 996.497