Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02281 ATGGGTAGGTGTCGAACAGCAGCACGCTCCGCAGACGACGACCCTAACCAGAGATCCAAGAGAAAAAAGGCTGCTTTAAATGCTGAGAATTTAGAAACTTCATCTGCAGGCTTGGGAATAGCTGATGGCAAGGTATCACTATATCACTGTAATTACTGCAACAAAGATATTTCAGGGAAGATTCGCATCAAATGCGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGCGCTGAATTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGGAATTGGAATGAAGTTGCAGACAATGTTGGAACGAAAAGCAAATCGCAGTGTATTGATCACTATAATGCTGAATATCTGAATTCGCCATGTTTTCCTCTACCTGATTTGTCTCATGTTATGGGAAAGAACAAAGATGAACTCCTTGCCATGGCAAATGGACATCAAGTCAAGAAAGAGTTTTCTCCAAATGCAGAGCTGACTTTGAAAGAAGAGCCTCTCTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGAAGCAACCACTAATCAAATGATGTCTAGGCTAACCTCAGCAAGTGGTGGTAAAGCTCTTTCAAGTTCAATCAAGAAGGCTTCCAATATGAGTCAGAATAATGGAGTTAAGGTGGAAGTTAAAGTGGAAGAATCTCAAGCAGGTCGGAGCATTGGTGAAAAGAAACCTAAATTATCCGGAGAATATAGGCCGTCTATGAAAGCGTTGAGCGGATACAATTCTAAGAGAGGTGAATTCGATGTTGAATACGACAATGATGCCGAGCAAATTTTGGCAGAAATGGAGTTTAAAGATACTGATACTGAAGTTGAACGTGAAACAAAACTGCAAGTGCTGCGGATCTACTCAAAAAGGTTAGATGAACGCAAGCGCAGAAAAAGTTTTATACTCGAAAGGAATTTACTTTGTCCTGATCCTTTTGAGAAATCTCTTTCTACTGAAGAGCTTAAAATATGTCAAAAGTACAAAGTCTTCATGCGGTTTCACTCAAAAGAAGATCACAAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTGTCAAAAGAATACAAGACTTACAGGAAGCTCGAGTTTCTGGCTGTGTAACGGCTGCTGATGCTTATCAATTTATTGAACAAAAGAGGACAAAAGAAGCTGAACAAGGTGGTCAGATTGGAATAAGTGGTAAGACTTTACAGAGGCCAAATTTCCCCAAAGTAGAGCTTGGTAGTAGCCCACGCGATACCAAGGATACACCGACGGCCATACAAGCCATTACAAGTACTCTAGAAGAATGGGATATCAGTGATTTTGAAGGGGCTGAATTACTATCTGAATCTGAGATAAAGCTTTGTAATGAGATAAGATTGCTACCGCCACACTTCCTCCGCATAAAGCAGATCATGCAATCTGGAATTTCAAAGGGAAGTATAACCAAGAAATCTGATGCATATCCACTGTTCAAGTTCTCTCCAAGCAAGATTGATAGGATTTATGATATGCTTTTGGAAAAAGGAGCTGGCCAAGCATAA 1647 0.4001 MGRCRTAARSADDDPNQRSKRKKAALNAENLETSSAGLGIADGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNEVADNVGTKSKSQCIDHYNAEYLNSPCFPLPDLSHVMGKNKDELLAMANGHQVKKEFSPNAELTLKEEPLFSDGINSEESKKEATTNQMMSRLTSASGGKALSSSIKKASNMSQNNGVKVEVKVEESQAGRSIGEKKPKLSGEYRPSMKALSGYNSKRGEFDVEYDNDAEQILAEMEFKDTDTEVERETKLQVLRIYSKRLDERKRRKSFILERNLLCPDPFEKSLSTEELKICQKYKVFMRFHSKEDHKELLKTIIEEHRLVKRIQDLQEARVSGCVTAADAYQFIEQKRTKEAEQGGQIGISGKTLQRPNFPKVELGSSPRDTKDTPTAIQAITSTLEEWDISDFEGAELLSESEIKLCNEIRLLPPHFLRIKQIMQSGISKGSITKKSDAYPLFKFSPSKIDRIYDMLLEKGAGQA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02281 548 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Vifa2g02281 548 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g02281 548 Pfam Zinc finger, ZZ type 48 87 IPR000433 GO:0008270
Vifa2g02281 548 Gene3D - 43 96 IPR043145 -
Vifa2g02281 548 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 543 - -
Vifa2g02281 548 SMART zz_5 44 88 IPR000433 GO:0008270
Vifa2g02281 548 FunFam Transcriptional adapter 41 96 - -
Vifa2g02281 548 SUPERFAMILY Homeodomain-like 101 153 IPR009057 -
Vifa2g02281 548 FunFam Transcriptional adapter 2 464 547 - -
Vifa2g02281 548 Gene3D - 464 546 IPR036388 -
Vifa2g02281 548 FunFam Transcriptional adapter 2 101 153 - -
Vifa2g02281 548 ProSiteProfiles SWIRM domain profile. 462 548 IPR007526 GO:0005515
Vifa2g02281 548 Gene3D - 106 150 - -
Vifa2g02281 548 SMART sant 104 153 IPR001005 -
Vifa2g02281 548 SUPERFAMILY Homeodomain-like 464 544 IPR009057 -
Vifa2g02281 548 CDD ZZ_ADA2 48 96 IPR041983 -
Vifa2g02281 548 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Vifa2g02281 548 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Vifa2g02281 548 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Vifa2g02281 548 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Vifa2g02281 548 PIRSF Txn_adaptor_ADA2 37 548 IPR016827 GO:0003713|GO:0006357|GO:0035065
Vifa2g02281 548 CDD SANT 108 148 IPR001005 -
Vifa2g02281 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 156 IPR017930 -
Vifa2g02281 548 SUPERFAMILY RING/U-box 48 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02281 Vifa-Chr2 592813857 592822034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02281 1 548 EF-hand Containing Proteins AT3G07740 53.076 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g02281 Myb_DNA-binding 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02281 K11314 - gmx:100779424 789.26