Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02274 ATGGTTGAAGCTTCTGGGATGATGTGCACCACCACCAACACCGCTCTTATTCCTGCTTTTAACCCTACTATTCACAGAACTCATCTTCCTCTCTCAAGAAGACACCATGTCCAATTTTCACTCTCTGCAACTGCAAGTCAAACTTCAACGTTTATGGAAACCATTCCTTGGGGTTGTGAGAATGATTCGCTGGAAAACTCTTCTTCTCTTCTGAAATGGTTGTCAGAGTCAGGTCTTCCATCTCAGAAGATGGCCATTGATAAAGTTGATGTGGGTGAGAGAGGACTTGTTGCATTGAAGAATATTAGGAAAGGGGAGAAGCTTCTCTTTGTTCCTCCTTCACTTGTCATCACTCCAGATTCTGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGCCTCACGGAGTCTTCAAAATGGTTCAGTTATATATCCGCCTTACCTCGTCAACCTTACTCACTTCTATACTGGTCACAGACAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAAAGGGCAATCGAAAGGACTAATAATGTTGTTGGAACATACAATGATATGAGGCTCAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCTTTCAAATGGTCATTTGGAATTCTTTTCTCCCGCATGGTTCGGTTACCCTCAATGGATGGAAAGGTGGCCTTGGTTCCTTGGGCGGATATGCTGAATCATAATTGTGAGGTGGAGACTTTTTTGGATTACGATAGATCTTCGAAGGGAATTGTCTTTACAACAGATCGTCCCTATCTACCAGGTGAGCAGGTGTTTATTTCCTATGGAAATAAATCAAATGGGGAGCTTCTGTTATCTTATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGCGACTCAGTTGAGCTACCATTGTCACTCAAGAAATCTGATGAGTCTTATGAGGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATTAGGATCTCAGTGTTTTCCATTAAGGGTCACCGGCTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCGACCGCATCAAATAAAACTACCTCCAATAAGGACTTGAGATATCCTGAAATAGAAGAGCAGGCATTGCAGTTCATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAATAAGTTCTTACAGGCAAGTGGATCGCTGGATTTGGACGTGACTTCTCCGAAACAACTTAACCGGAGACTCTTTCTAAAACAGCTAGCCATAGACTTGTGTACGAGCGAGCGGAGGATACTATTCCGTGCTCAATACATATTGAGAAGAAGATTGAGGGATATGAGAACTGGTGAATTAAAAGCCTTAACAATCTTCAATGGGTTCAGGAAATTTTTCAAGTGA 1494 0.4197 MVEASGMMCTTTNTALIPAFNPTIHRTHLPLSRRHHVQFSLSATASQTSTFMETIPWGCENDSLENSSSLLKWLSESGLPSQKMAIDKVDVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLTESSKWFSYISALPRQPYSLLYWSQTELDRYLEASQIRERAIERTNNVVGTYNDMRLRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHNCEVETFLDYDRSSKGIVFTTDRPYLPGEQVFISYGNKSNGELLLSYGFVPKEGTNPSDSVELPLSLKKSDESYEEKLELLKKYGLLGSQCFPLRVTGWPLELMAYAYLAVSPSSMRGKFEEMAATASNKTTSNKDLRYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAIDLCTSERRILFRAQYILRRRLRDMRTGELKALTIFNGFRKFFK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02274 497 Pfam SET domain 94 298 IPR001214 GO:0005515
Vifa2g02274 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 58 435 - -
Vifa2g02274 497 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 49 311 - -
Vifa2g02274 497 Gene3D set domain protein methyltransferase, domain 1 27 311 - -
Vifa2g02274 497 ProSiteProfiles SET domain profile. 82 298 IPR001214 GO:0005515
Vifa2g02274 497 Pfam Rubisco LSMT substrate-binding 331 464 IPR015353 -
Vifa2g02274 497 PIRSF RMT_SET 7 494 IPR011192 GO:0009507|GO:0030785
Vifa2g02274 497 SMART set_7 82 304 IPR001214 GO:0005515
Vifa2g02274 497 CDD SET_RBCMT 77 312 IPR044431 GO:0016279|GO:0018022
Vifa2g02274 497 Gene3D - 317 482 IPR036464 -
Vifa2g02274 497 SUPERFAMILY SET domain 68 315 IPR046341 -
Vifa2g02274 497 FunFam Rubisco methyltransferase family protein 317 480 - -
Vifa2g02274 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 328 495 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02274 Vifa-Chr2 591360657 591363403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02274 72 267 NAC Transcription Factor Family AT3G56570 22.727 2.67e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g02274 SET 5.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02274 - - cam:101500121 842.417