Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02271 ATGGCGTCAAGGAAGACCGACAACCCTCAATACGGAGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGAAACAACCATAGACACGTTTGTGAAGTACTTCGAAAGGTATGGAGAGATAACGGATTCCGTTATCATGAAGGATCGACATACCGGTCGACCTCGAGGGTTTGGGTTCATTACATATGCGGATCCTTCCGTTGTTGATCAAGTTATTCAGGAGAATCACATCATCGATGATAAGCAGGTTGAAATTAAGAGGACCATTCCAAAGGGTGCATCACATACTAGTGACTTCAAAACTAAGAAGATTTTTGTAGGTGGTATTCCAGCTGCAGTAACTGAAGATGAGCTCAAGAACTTCTTTTCTAAGCATGGAAATGTTGTGGAGCATGAGATAATACGTGACCATGCCACTAAAAGATCTCGTGGATTTGGTTTTGTAGTCTTTGATAATGACAAGGTTGTTGATACTTTGTTAGCTGATGGGAACATGATTGATATGGACGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAGTTCAGCTTCTTTTCCTCCATTTGGTAGCGACTCTAGGTCACGGTCTTACAATGAGGGTTTTGGTGGATTTGGTGATTCTTATGGAGGTTTTCCCAGTGGAGGTTATGCCCCTGCATCTTATAGGTCACTTGGAGGTTACACTGCTAGGCTTAGCGATTATGGTGGGTACGGAGGTGGAGATGACTTCAGTGGTGGTTTTGGAGGTTATGGGGGCAGTGGTGGTGCTGGTGGTTATGCGGGCTATAGAGGAGAATCATCATTTGGCTACTCTGGCCGCTATGGATCGTACATGGGTGGCCTTGGTGGTGGATATGGTGGTAGTGGGTTAGCCCCATATGGGAGAGGTGGCACGGGCTATGGAAATTATGGTGGTTCAGGCACAGGTGGAGGTTATGAAACTGGCCCTGGTGCAGGTTTTGGTGGAACAGGAGGACTCTATTCTAGTAGGGGAGGATATGGGGGCGGTAGTCGTTACCATCCTTACACAAGATAG 1059 0.4665 MASRKTDNPQYGDGASPGKIFIGGLAKETTIDTFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHIIDDKQVEIKRTIPKGASHTSDFKTKKIFVGGIPAAVTEDELKNFFSKHGNVVEHEIIRDHATKRSRGFGFVVFDNDKVVDTLLADGNMIDMDGTQVEIKKAEPKKSSSSASFPPFGSDSRSRSYNEGFGGFGDSYGGFPSGGYAPASYRSLGGYTARLSDYGGYGGGDDFSGGFGGYGGSGGAGGYAGYRGESSFGYSGRYGSYMGGLGGGYGGSGLAPYGRGGTGYGNYGGSGTGGGYETGPGAGFGGTGGLYSSRGGYGGGSRYHPYTR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02271 352 Gene3D - 97 220 IPR012677 -
Vifa2g02271 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vifa2g02271 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Vifa2g02271 352 MobiDBLite consensus disorder prediction 186 202 - -
Vifa2g02271 352 SUPERFAMILY RNA-binding domain, RBD 15 96 IPR035979 GO:0003676
Vifa2g02271 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Vifa2g02271 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Vifa2g02271 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 352 - -
Vifa2g02271 352 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Vifa2g02271 352 SUPERFAMILY RNA-binding domain, RBD 102 213 IPR035979 GO:0003676
Vifa2g02271 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vifa2g02271 352 MobiDBLite consensus disorder prediction 179 202 - -
Vifa2g02271 352 Gene3D - 18 96 IPR012677 -
Vifa2g02271 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 162 IPR000504 GO:0003723
Vifa2g02271 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02271 Vifa-Chr2 591344424 591346134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02271 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 27.083 4.57e-15 74.7