Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02265 ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTGTGCATAATTTTAGTAAACACTGCCATGTCAATATCCATATTCAAAGGGATTATTAAAACTATCCTACATATAATTGGTATCATTGCTTCACCACCATCCTCCTCAACTTCAGATGATTCATTTGAGTTCCATCTAAGTCCTTCAGATGATTTCATCGAAGAGTTCAGAAGCATGACACCAACACTTAGGTTTGAGAGTGTGTGTAGTAGCTGCAAAGAGCCTGAACATGATTGTTCAGTGTGTCTCACTCAATTTGAACCAGAATCAGAGATAAACTACTGTTTATCTTGTGGACATCTTTTCCATAAAGTTTGTTTGGAGAAGTGGTTGGACTATTGGAACATTACTTGTCCACTTTGTAGGACTCCTTTGATTCCTGAAGATGATGCCGCATCTTGCTTTTCATGA 450 0.3889 MGLSSLPAPSEGVLCIILVNTAMSISIFKGIIKTILHIIGIIASPPSSSTSDDSFEFHLSPSDDFIEEFRSMTPTLRFESVCSSCKEPEHDCSVCLTQFEPESEINYCLSCGHLFHKVCLEKWLDYWNITCPLCRTPLIPEDDAASCFS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02265 149 SMART ringv_2 91 135 IPR011016 GO:0008270
Vifa2g02265 149 Pfam Ring finger domain 91 135 IPR001841 -
Vifa2g02265 149 SUPERFAMILY RING/U-box 84 141 - -
Vifa2g02265 149 PANTHER - 1 143 IPR044249 -
Vifa2g02265 149 SMART ring_2 92 134 IPR001841 -
Vifa2g02265 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 136 IPR013083 -
Vifa2g02265 149 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02265 Vifa-Chr2 587201709 587202158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02265 1 146 C3H Transcription Factor Family AT2G04240 55.975 8.98e-57 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02265 K16285 - gmx:100786803 219.935