Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02258 ATGGATGCTCTTCTTCGTTGCATGATTTTTCTTGTATTATTCCATGCTCTTCTGGTAAATCCTTGTTATTGCTTCAAAAGGAATTCATTTAATGTTTCTCATCTTGAAAATAAGGAAGAAGATAATAAATGGCGAACGGGAAAAGCTACACATTATGGGCCTCCAAAGGGTGCTGGATCAACAGGAGGGGCATGTGGATATGGTGATACCGTAGAAAAACATCCGTTTAATAAAATGATATCGGCTGGTGGTGGATCTATTTACCGTAACGGAAAAGGTTGTGGTTCTTGTTATAAGGTGAAATGCACAGAGAATAAAGAATGTTCAGGAAAATCTGTGAGAGTGGTTATAAGTGATGAATGTGGAGGATGTGGTGAGGGTCATTTCGATCTAAGTTGCACTTCCTTTGAAAGCCTTGCAAAAAAAGGCCAAGACCATGGTAAAAATCTTATAGATGCTGGAATGATTAAGATTGAGTACAAGAGGATTGCATGCAATTTTTGGAGGACAATAGCCTTTGAAACTGATAAGGGAGCCAACCCATTTCATTTTATTGTTCAAATACAATACCAAAATGGATATGGTGACATTGAAAAAGTTGAATTGAAGGAACAGGGATCAAAAAAATGGCATCCAATGCAACATTCTTGGGGTGCAAGATGGTTTTTGAGTATTGGTAAAGAGTTGAATCCTCCATATTCTATTAGACTCACACAAACTGGAAATGGAAAATCCAAGACCATTAAAGCTCGTAAAGTCATTCCAAAAAGTTGGAAACCAGGCAAAGTTTATTGGTCACAGTCTAATTTATAG 813 0.3727 MDALLRCMIFLVLFHALLVNPCYCFKRNSFNVSHLENKEEDNKWRTGKATHYGPPKGAGSTGGACGYGDTVEKHPFNKMISAGGGSIYRNGKGCGSCYKVKCTENKECSGKSVRVVISDECGGCGEGHFDLSCTSFESLAKKGQDHGKNLIDAGMIKIEYKRIACNFWRTIAFETDKGANPFHFIVQIQYQNGYGDIEKVELKEQGSKKWHPMQHSWGARWFLSIGKELNPPYSIRLTQTGNGKSKTIKARKVIPKSWKPGKVYWSQSNL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02258 270 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Vifa2g02258 270 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576|GO:0019953
Vifa2g02258 270 PRINTS Major pollen allergen Lol pI signature 102 112 IPR005795 GO:0005576|GO:0019953
Vifa2g02258 270 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Vifa2g02258 270 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576|GO:0019953
Vifa2g02258 270 Gene3D - 28 166 IPR036908 -
Vifa2g02258 270 PANTHER EXPANSIN-B3 15 267 - -
Vifa2g02258 270 Gene3D - 169 269 IPR036749 -
Vifa2g02258 270 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Vifa2g02258 270 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Vifa2g02258 270 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Vifa2g02258 270 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Vifa2g02258 270 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Vifa2g02258 270 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Vifa2g02258 270 Pfam Lytic transglycolase 81 160 IPR009009 -
Vifa2g02258 270 SUPERFAMILY Barwin-like endoglucanases 42 168 IPR036908 -
Vifa2g02258 270 SUPERFAMILY PHL pollen allergen 170 266 IPR036749 -
Vifa2g02258 270 Pfam Expansin C-terminal domain 171 255 IPR007117 -
Vifa2g02258 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 170 IPR007112 -
Vifa2g02258 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 266 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02258 Vifa-Chr2 585274986 585275914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02258 20 270 Expansin Gene Family AT1G65680 45.490 2.07e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02258 - - psat:127079935 436.802