Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02257 ATGGCTCTCGGCGTCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTATGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATCTGCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCAAGGAGTTCATGGTTTAGGTCTGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAGGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGCGCTGTATACTTCGAATGGCCTTCGGAGAGAACAGATGGATATATCCTTCCATGTATAGTCGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTATCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 753 0.4104 MALGVSCLNGIEEAEAQCALLNSESLCDGCFSSDSDIFLFGARTVYREICLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHQGVHGLGLELACQIVKSIGEKDVLKKFASEGLGWVKKGKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICAVYFEWPSERTDGYILPCIVERDLRRFANLRSTSSELGLNLPLHEGLESPADGRRSSESSYRIGDNGTSGGTN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02257 250 SMART xpgineu 1 71 IPR006086 GO:0004518
Vifa2g02257 250 MobiDBLite consensus disorder prediction 230 250 - -
Vifa2g02257 250 Gene3D - 1 70 - -
Vifa2g02257 250 Gene3D - 71 136 - -
Vifa2g02257 250 Pfam XPG I-region 4 86 IPR006086 GO:0004518
Vifa2g02257 250 SUPERFAMILY PIN domain-like 2 86 IPR029060 -
Vifa2g02257 250 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 71 208 IPR036279 -
Vifa2g02257 250 FunFam Flap endonuclease GEN-like 1 71 128 - -
Vifa2g02257 250 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 2 213 IPR006084 -
Vifa2g02257 250 MobiDBLite consensus disorder prediction 225 250 - -
Vifa2g02257 250 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 91 IPR006084 -
Vifa2g02257 250 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 21 41 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02257 Vifa-Chr2 585201329 585203397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02257 3 107 Core DNA Replication Machinery Family AT5G26680 32.710 9.68e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02257 K15338 - gmx:100806919 374.4