Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02253 ATGAAGAGGGCTATCTCGGTGGGATCATTAGAGGGAAAAGGGGTGATAGAACTCGAAAACGCGATTCTACTAAATCCTTCTTTATTTCCTAGAAAAGATGTATCCTTCGAAGAAGATTCACCAATTGATCATGAGTATGGGAATTTTTCACAAAATGTAATAAGTAAGGTGCTTAGTAGTATAAAAGTTGTAGTGCTTTCAACCAAGATAAACTTGCTCATGCCTTTTGGTCCTATGGCGATTTTGGTAGATAGATTGTTTCATAGTCATGGTTGGGTTTTTGTTTTCAGCTTATTAGGTATTATACCCTTGGCCGAGCGTTTAGGCTATACAACCGAGCAGCTGGCCCTCTTTACTGGACCGGCAGTTGGTGGTTTATTATATGCCACATTTGGAAATGCAACGGAGTTGATTATATCAATTCACGCCCTCAAAAGTGGCTTGATTCGTCTTGTTCAACAATCGTTACTCGGCTCAATTCTGTCTAACCTGTTGCTAGTACTTGGATGTGCATTATTTGCTGGTGGATTAGTATTTCATAAGAAAGAACAAGTATTTAACCATGCAGATACTAGTGTGGATTTCGGATTGTTGTTGATGGCGGTAATGGGCCTGCTATTTCCAGCGGTTCTCCATGCTACACAAACAGAATTAGAATATGGAAAGTCTCAGTTATCTCTTTCAAGATTTACTAGTTGCATTATGCTTGTGGCATATGCTTCATATATAGTGTTTCAGTTGAAGAGTCAGAAGAATTTAGAACTTCCAGTTTATGAGGACAAGGGTTTCAATGAGGATACTTCGAATGACGCTGAAGCTCCTGCGATTTCGATGTGGGAATCAATGATATGGATTTCGATTTTAACAGGAGGTATATCTATCTTGTCAGAATACTTGGTTAAAACCATAGAGGGGGCATCAAAAGAATTTCAAATGCCTGTGTCATTTCTAAGTGTTATTCTTCTTCCAGTAGTTGGGAATGCTGCAGAACATGTTGGATCTGTTATGTTTGCTGTCAAAGACAAACTTGATATATCGCTGGCTGTGGCTGTAGGATCTTCAATACAAATATCAATGTTTATGATTCCATTTTGCGTGGTTGTTGGATGGATGATCGGATGCCCTATGGACTTAAATTTTCAGCCTTTTGAAACAACTTCTCTTTTCATGTCAGTTATTATAGTAAACTTCATGTTGCAAAATGGAAGTTCCAACTACTTCAAAGGAATAGTGCTCATTCTTTGCTATTTGATAGTTTCTGCCAGTTATTTTGAACATATTGATCCTATGTCAGTTGAAGATAATCCCTCAACTGCGGTCGGTAAGAGTCAGTGA 1335 0.3843 MKRAISVGSLEGKGVIELENAILLNPSLFPRKDVSFEEDSPIDHEYGNFSQNVISKVLSSIKVVVLSTKINLLMPFGPMAILVDRLFHSHGWVFVFSLLGIIPLAERLGYTTEQLALFTGPAVGGLLYATFGNATELIISIHALKSGLIRLVQQSLLGSILSNLLLVLGCALFAGGLVFHKKEQVFNHADTSVDFGLLLMAVMGLLFPAVLHATQTELEYGKSQLSLSRFTSCIMLVAYASYIVFQLKSQKNLELPVYEDKGFNEDTSNDAEAPAISMWESMIWISILTGGISILSEYLVKTIEGASKEFQMPVSFLSVILLPVVGNAAEHVGSVMFAVKDKLDISLAVAVGSSIQISMFMIPFCVVVGWMIGCPMDLNFQPFETTSLFMSVIIVNFMLQNGSSNYFKGIVLILCYLIVSASYFEHIDPMSVEDNPSTAVGKSQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02253 444 FunFam Vacuolar cation/proton exchanger 269 425 - -
Vifa2g02253 444 Gene3D - 121 259 IPR044880 -
Vifa2g02253 444 Gene3D - 267 423 IPR044880 -
Vifa2g02253 444 NCBIfam calcium/proton exchanger 74 424 IPR004798 GO:0006816|GO:0015369
Vifa2g02253 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 52 429 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vifa2g02253 444 Pfam Sodium/calcium exchanger protein 283 419 IPR004837 GO:0016020|GO:0055085
Vifa2g02253 444 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016020|GO:0055085
Vifa2g02253 444 NCBIfam calcium/proton exchanger 57 423 - -
Vifa2g02253 444 FunFam Vacuolar cation/proton exchanger 121 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02253 Vifa-Chr2 584562095 584564817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02253 25 429 Antiporters AT1G55730 62.954 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02253 K07300 - jre:109000743 552.747