Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02252 ATGAGAATAAAAAGCGTCAGCGGTGGCCGCCGGCGTAGCATTACGCCTTCCGTGACTCCCTCCGCCTCTCCCATTCCTCTTCTCTCCACCGCCCAGGACGACCACAATGCAACCGTCTACGACAGCGACAGCACCGGCGATCACACACCATTTCCCGATTTCGTTCCCGATTCCGAACCACCAGATTCCTTAGACGATGACATTTGCATTATCTGTAACCAAGCCGGAGGAGCATTGCTAGTTTGTACCCAAACCGATTGCCCCGTTATAGTCCACGTCACATGCATCGGTTCCGAACCTAAGTTCGATGATTCTAGAAACTTCTTCTGTCCGTATTGCTCCTACAAGCGAGCGTTGAAGAGAACTAGAGAATTTAGAGAAAAAACGATTTTAGCGAAGAAAGCTCTTTCGAGCTTTTTGGAAAAAAGCCAAACAGTGCGTAAGGATGATGATGATGATGACATTGCCGAACCAGAACCGGTTCAGGATTGTCCGCACCGGGATGAACCGAATGTTTCTGATTCTGAGGATTCTGAGGAAAGAAAAGAACTAAATAGTAATGAAAATGATAAAGATAAAGGAAAGGTTTCTGTTTCAGGTAGTTCAGTCAGTGAAGCTAAAGATTCTGACTCGAATTCTGTCTCCGTGAATAAAGGTAATGCCAATGTCAATGCCAGAGGCAAACGCAAGGTTGCTTATGTGAAAAAATCATTGTTACCGGTACCAAAAACTGGTGGTGGTGATGATGGGGAGGAGGAAGTTACCAGCTCTAGAACTTTAAGTGTACAAAAGCAAGTGACGAACCAGAATTTGCTGACTGGAAAGCGTAGGAGATTGCTCTGGACAAATGAAGAAGAGAAAGTTCTCAAGGAAGGAGTGTTGAAGTACTCAACCGAAAAGCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGTTGCCGTGTCTTTGATAAGACTCGGACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAGGAAGGATACACGTAG 1020 0.448 MRIKSVSGGRRRSITPSVTPSASPIPLLSTAQDDHNATVYDSDSTGDHTPFPDFVPDSEPPDSLDDDICIICNQAGGALLVCTQTDCPVIVHVTCIGSEPKFDDSRNFFCPYCSYKRALKRTREFREKTILAKKALSSFLEKSQTVRKDDDDDDIAEPEPVQDCPHRDEPNVSDSEDSEERKELNSNENDKDKGKVSVSGSSVSEAKDSDSNSVSVNKGNANVNARGKRKVAYVKKSLLPVPKTGGGDDGEEEVTSSRTLSVQKQVTNQNLLTGKRRRLLWTNEEEKVLKEGVLKYSTEKQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGYT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02252 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 154 IPR013083 -
Vifa2g02252 339 Pfam Myb-like DNA-binding domain 281 332 IPR001005 -
Vifa2g02252 339 ProSitePatterns Zinc finger PHD-type signature. 69 113 IPR019786 -
Vifa2g02252 339 SUPERFAMILY Homeodomain-like 276 333 IPR009057 -
Vifa2g02252 339 SUPERFAMILY FYVE/PHD zinc finger 58 121 IPR011011 -
Vifa2g02252 339 MobiDBLite consensus disorder prediction 142 223 - -
Vifa2g02252 339 SMART PHD_3 68 114 IPR001965 -
Vifa2g02252 339 MobiDBLite consensus disorder prediction 1 58 - -
Vifa2g02252 339 CDD SANT_TRF 281 333 - -
Vifa2g02252 339 MobiDBLite consensus disorder prediction 196 222 - -
Vifa2g02252 339 SMART sant 277 335 IPR001005 -
Vifa2g02252 339 MobiDBLite consensus disorder prediction 159 195 - -
Vifa2g02252 339 MobiDBLite consensus disorder prediction 10 45 - -
Vifa2g02252 339 Gene3D - 271 334 - -
Vifa2g02252 339 ProSiteProfiles Myb-like domain profile. 273 333 IPR001005 -
Vifa2g02252 339 ProSiteProfiles Zinc finger PHD-type profile. 66 116 IPR019787 -
Vifa2g02252 339 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 56 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02252 Vifa-Chr2 584433152 584435436 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02252 281 332 Single Myb Histone (SMH) Gene Family AT5G67580 54.545 1.67e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02252 - - mtr:11429054 390.963