Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02236 ATGGACAAAGAAGGTGTTGAACTTCAAACTGATGCAGTTTCAATGATCACAGATTCTTCACTTCTTCATCACCAGGTTTCAAGAAGACCCAGTCTTTCTTCTCTACAGATACCAACAAGGTCACTAGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTATCAAGTCCGGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACCAAAGTCAAATCCTCTATGAGAAGTTTGATTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCACAAGATTCTGAAAAGACGGTTTTGATTGTTCCTGATACTGTATCGTCGAATGGTCCTTTGGATAAGCCTTCTACTTCGAGATCACTTTCGCTTAACAAGATTTTGTTCCCTTCATCGGCAAAAGCCGCACATTCATTACCGGTTACTCCAATTGCAAATTCAGATGCAGATAATGTAAATGGAAGACACGTCGAGGGCGATTCTGATTTGAATAAAGTGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTCAAAGCAGCTAATTTAAGGCCTACAGATTCGAGGCGCCTGGTTCGTGTAATTTCAGCAAGACCGCATACTGCAGCTTCTGATGGCATTTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCGGTTTGTAGAATTTGTTTGGTGGAGCTTACGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGCGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAATGGTTTAGTATCAAAGGAAATAAGACCTGTGATGTATGCAAGCAGGATGTCCGGAACCTTCCAGTAACACTCTTGAAAATTTCTAGTCCTCCAACTGTTGTTCGACATCCATTGAATGCTTCGCAGCAGAGAGAAGTAGCTAATTACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCACACTTGCATACTTTTGCTTTCTTGAGGAACTATTGGTTTCGGATTTGGGTCCGCGTGCTCTCGCCATTTCTTTGCCTTTCTCATGCATTTTAGGTCTCCTTTCATCTCTAATTGCTTCAAGCATGGTGAGCAGGAGTTACATATGGGCTTATGCATGCTTCCAGTTTGCATTTGTCATCCTGTTTGCTCATGTATTCTATTCAATACTTAATGTTACTGCAATATTCTCGGTTCTTCTTTCAACATTCACCGGATTTGGGATTTCGATTAGCGTGAATTCCCTCTTGATGGAATATATTAGATGGAAAACAAGTAGACAGATTCAATCTTCTAATCAAAATATTATTTTGAGACAGCAGCAGCAGCACCAATGA 1377 0.4132 MDKEGVELQTDAVSMITDSSLLHHQVSRRPSLSSLQIPTRSLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMRSLISDRSFRTKTCSQDSEKTVLIVPDTVSSNGPLDKPSTSRSLSLNKILFPSSAKAAHSLPVTPIANSDADNVNGRHVEGDSDLNKVKVNKHMTRSFSVPVNVKAANLRPTDSRRLVRVISARPHTAASDGISTRSDSMQEIVIEDASEDIPEEEAVCRICLVELTEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRHPLNASQQREVANYRIWQDVPVLVLVSTLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSLIASSMVSRSYIWAYACFQFAFVILFAHVFYSILNVTAIFSVLLSTFTGFGISISVNSLLMEYIRWKTSRQIQSSNQNIILRQQQQHQ 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02236 458 ProSiteProfiles Zinc finger RING-CH-type profile. 230 292 IPR011016 GO:0008270
Vifa2g02236 458 MobiDBLite consensus disorder prediction 27 90 - -
Vifa2g02236 458 SUPERFAMILY RING/U-box 234 289 - -
Vifa2g02236 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 293 IPR013083 -
Vifa2g02236 458 SMART ringv_2 237 286 IPR011016 GO:0008270
Vifa2g02236 458 MobiDBLite consensus disorder prediction 27 66 - -
Vifa2g02236 458 MobiDBLite consensus disorder prediction 74 90 - -
Vifa2g02236 458 CDD RING_CH-C4HC3_MARCH 238 286 - -
Vifa2g02236 458 PANTHER OS02G0165000 PROTEIN 24 449 - -
Vifa2g02236 458 Pfam RING-variant domain 238 285 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02236 Vifa-Chr2 577284111 577286708 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02236 232 292 C3H Transcription Factor Family AT2G37950 48.387 7.30e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02236 - - gmx:100779396 609.372