Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02226 ATGGTGAAGCTTCCATTCTTCGATTCGACTCAATCTTCTTCATCTTCTGCGCGATCTTTGTATCATCCGAATATCAAGAATTTCAACCGCCGGTCACTGCAATTTGAGTGTTCATTCAGTATATTAAATCCATCCTCTTTGTCGAGAAAGGGTCTTGATGTTCATACTGTCCATCTCCATAGGCTACTGATGCGCTTTCAACATTTAGAGTCTTTATCCTTATGTGGTTGTACGGAGCTCAATGATTCAGGATTAACCCGTCTGCTAAGCTATGGTTCGAATTTACAGAAACTTAATCTAGATTGTTGTTTGAAAGTTACTGATTACGGGCTATCCCTGGTTGCTTCTGGTTGTCCCTCATTGACGTCAATTAGTCTCTATCGGTGTATCAACATTTCTGATGACGGATTAGAGACTTTAGCCACTGCTTGTTTATCTTTGAAATGCATAAACCTCTCGTACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGAGGTGTCGTCAGCTTCAGGCAGTTAACATATCACACTGTGAGAGTATAAGAGGTGTTGGCTTCAAAGGGTGTTCAAAATCTCTCACACATGCATTACGAGACGGTTGCAGAAGTCTCTCGGTTTTGTACTTGAATGGTTGTGTTCACGTGACTCCTTTTGCATTAGAGTTATTCAAGTCTCACAGAGCAAATGTTTGTATAAAGGATGAAGAGAAAGCTTTACCATTACCTGATCAAGTAGACAATGCTATAAACTACATAAAGAGCTTAGAGACAAATTTGAAATTGGCAAAGGAGAAGAAAGAAAGTTTAATGAGAAGCAAGAGATTGCGTAGTGGCTGTTCGAGTTCTACTGGAGCAAAAGGAAGCATAAAATCACCAAAAATAGAGATTCATGAAAATGGTTCTTCTCTACAAGTTATTGTAACTTGTGGGGTTGATGAACAGTTTATTTTCTGTGAAATTATGAGAATATTGCATGAAGATCGCGTGGAGGTCATCTCTGCAAATTCTTCACTGGTTGGAGATTCAGTTATTCATGTTGTGCATGCTGAGAATCCGCAATTATTGTTTCAATATGGAGCGACCAAAGTGGAGCCTCAATTATGGGATTCTGAGATTGAAACTGAGACTTGGGATCTAAGTTCTATAGTAAACAAGTGTTTACCAAATTCTTTATGA 1185 0.3899 MVKLPFFDSTQSSSSSARSLYHPNIKNFNRRSLQFECSFSILNPSSLSRKGLDVHTVHLHRLLMRFQHLESLSLCGCTELNDSGLTRLLSYGSNLQKLNLDCCLKVTDYGLSLVASGCPSLTSISLYRCINISDDGLETLATACLSLKCINLSYCSQISDKGLKALTQRCRQLQAVNISHCESIRGVGFKGCSKSLTHALRDGCRSLSVLYLNGCVHVTPFALELFKSHRANVCIKDEEKALPLPDQVDNAINYIKSLETNLKLAKEKKESLMRSKRLRSGCSSSTGAKGSIKSPKIEIHENGSSLQVIVTCGVDEQFIFCEIMRILHEDRVEVISANSSLVGDSVIHVVHAENPQLLFQYGATKVEPQLWDSEIETETWDLSSIVNKCLPNSL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02226 394 PANTHER UNCHARACTERIZED 44 240 - -
Vifa2g02226 394 SUPERFAMILY RNI-like 59 221 - -
Vifa2g02226 394 SMART LRR_CC_2 92 117 IPR006553 -
Vifa2g02226 394 SMART LRR_CC_2 66 91 IPR006553 -
Vifa2g02226 394 SMART LRR_CC_2 204 229 IPR006553 -
Vifa2g02226 394 SMART LRR_CC_2 144 169 IPR006553 -
Vifa2g02226 394 SMART LRR_CC_2 118 143 IPR006553 -
Vifa2g02226 394 SMART LRR_CC_2 170 195 IPR006553 -
Vifa2g02226 394 Coils Coil 248 275 - -
Vifa2g02226 394 Pfam Leucine Rich repeat 144 166 IPR001611 GO:0005515
Vifa2g02226 394 Gene3D Ribonuclease Inhibitor 8 274 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02226 Vifa-Chr2 576335632 576337637 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02226 240 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.507 2.93e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02226 K10268 - gmx:102667402 281.182