Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02224 ATGGCGCGGCTCCTCGCGAAGCTGACGCTAATCACAATCGCTCTAACATTCCTCTTCTCTCCGTCGCATTCCGCCGTATTCAGCATAGATCTCGGCTCCGAATCGCTCAAGGTAACCGTGGTAAACCTAAAACCAGGCCAGACTCCGATCTCCGTCGCGATCAACGAGATGTCGAAACGGAAATCACCGGTGCTAGTTTCGTTCCACGACGGAGATCGTCTCCTCGGCGAGGAAGCAGCGGGTCTAGTCGCGCGGTATCCGCAAAAAGTTTATTCTCAAATGAGAGACCTAATCGGGAAACCCTACGCTTCTGCTAAGAAGTTTCTAGATTCGTTGTATTTACCTTTCGAGGCGAAGGAGGATTCTACAAGAGGCACTGTGAATTTCGTGGTGGATAAAAACGGTACGTATTCGCCCGAGGAATTGGTTGCTATGGTTTTGAGTCATGCCGCAAATTTGGCGGAGTTTCATTCGAAGATTCCGATTAAAGACGCGGTGATTGCTGTTCCGCCTTATTTCGGACAAGCGGAACGGAAGGGATTGCTTCAGGCGGCCGAGTTAGCTGGGATTAATGTTCTTTCGTTGATTAACGAGCATTCTGGTGCGGCGTTGCAGTATGGGATTGATAAGGATTTCTCGAACGAGTCGAGGCATGTTGTTTTCTATGATATGGGTTCTAGCAGTACCTATGCTGCACTTGTGTATTTCTCATCTTATAAAAGTAAAGAGTATGGGAAGACAGTGTCGGTGAATCAGTTTCAGGTCAAGGATGTCCGTTGGAACCCTGAGCTGGGTGGTCAGCACATGGAATTGCGACTGGTAGAGTATTTTGCTAATGAATTCAATGCACAAGTTGGTGGTGGAATAGATGTGAGAAAATTTCCTAAGGCTATGGCTAAGTTAAAGAAACAGGTTAAACGGACAAAAGAAATTCTCAGCGCAAACACCGGAGCTCCCATTTCTGTTGAGTCTCTTCACGGTGATGTGGACTTCAGGAGCTCAATAACCCGTGAGAAGTTTGAAGAGCTCTGTGAAGATATTTGGGAAAAATCTCTTGTACCGTTGAAAGAGTTGCTTGAGCATTCAGGCTTGTCAGCAGATCAAATATATGCAGTGGAGTTAATTGGAGGTGCTACCAGAGTGCCAAAGTTACAGGCTAAGCTTCAAGAGTTCCTTGGTAGAAAAGAACTTGATAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGTGCTGCTCTGCATGCTGCAAATATAAGTGATGGTATCAAATTAAACCGAAAACTAGGTATGGTTGATGGTTCCTTATACGAGTTTGTGATTGAATTGAGTGGTGCCGATCTTCCGAAAAGTGAAAGTTCTAGGCAGTTACTTGTACCTAAAATGAAGAAACTTCCGAGTAAGATGTTCAGATCCATTATTCATGACAAAGATTTTGAAGTTTCTCTAGCTTATGAAAGTGAACATCTTTTGCCACCTGGTGTTACCTCTCCCTTAATTGCTCAATACCAGATATCTGGTTTAGCAGATGCAAGTGAGAAATATTCGTCTCGGAATCTGTCGTCCCCCATTAAGGCAAATGTACATTTCTCTCTTAGTAGAAGCGGAGTTCTTTCTCTGGATCGGGCAGACGCTGTTGTTGAAATAACAGAGTGGGTGGAAGTTCCCCGGAAGAACTTGACCATAGAGAATTCAACTATTTCGTCAAATGTATCAGATGAATCTAGTGCTAGTAACAATTCCGAGGAAAGCAGTGAAAGTGTGCAAAGTGATAGTGGTATTAATAAGACATCTAACACGAGTGCTGAAGAGCAAGCTGCTGCTGAACCTGCTACAGAGAAAAAGCTGAAAAAGCGGACCTTTAGGGTACCATTAAAGATTGTTGAGAAGATTACAGGAGCAGGGATGTCTCTATCGAAAGATTTTCTTGCTGAAGCTAAAACAAAATTACAAGCACTAGACAAAAAGGACGCAGAAAGGAAAAGGACAGCCGAGTCTAAAAATAATTTAGAAGGATATATATACACTACTAAGGAAAAGATTGAAACTCTTGAGGAGTTTGAAAAAGTCTCTACGAGTGAGGAACGCAAGTCCTTTGTTGAGAAGCTTGATGAGGTGCAAGATTGGTTATATACAGATGGTGAAGATGCCAACGCCACAGAGTTTGAAGAGCGTCTAGATCAGTTGAAAGCTGTTGGAGATCCAATTTTCTTCAGGTTAAAAGAGCTTACAGCTCGACCAGCAGCAGTTGAGCATGCCCGCAAATACCTTATTGAGCTGAAACAGATTGTAGAAGAGTGGAAATCAAAGAAGTCCTGGCTTCCAAAAGAACGAGTAGATGAGGTGATTAATATTGCAGAAAAGTTAAAGAACTGGCTGGATGAGAAAGAAACTGAGCAAAAGAAAACTTCTGGATTCAGTAAGCCTGCATTTACATCTGAAGAAGTACACTTAAAGGTGTTTGAACTACAAAACAAGGTTGCCAGTATTAATAGAATCCCCAAGCCCAAGCCCAAGATTCAGAAGTCCACAAAGAATGAAAGTGAGAGCAATGAGCAGAATACTGATACTGATAATTCTGATTCCACCTCAACTGATAGTTCCTCCCAAAGTGATGAATCTGCTAACCCGTCAAAAGGTGAAAGTGAAGAATCGGTTGACGAGCAACCTGAAAAGCACGATGAGTTATGA 2688 0.4301 MARLLAKLTLITIALTFLFSPSHSAVFSIDLGSESLKVTVVNLKPGQTPISVAINEMSKRKSPVLVSFHDGDRLLGEEAAGLVARYPQKVYSQMRDLIGKPYASAKKFLDSLYLPFEAKEDSTRGTVNFVVDKNGTYSPEELVAMVLSHAANLAEFHSKIPIKDAVIAVPPYFGQAERKGLLQAAELAGINVLSLINEHSGAALQYGIDKDFSNESRHVVFYDMGSSSTYAALVYFSSYKSKEYGKTVSVNQFQVKDVRWNPELGGQHMELRLVEYFANEFNAQVGGGIDVRKFPKAMAKLKKQVKRTKEILSANTGAPISVESLHGDVDFRSSITREKFEELCEDIWEKSLVPLKELLEHSGLSADQIYAVELIGGATRVPKLQAKLQEFLGRKELDRHLDADEAIVLGAALHAANISDGIKLNRKLGMVDGSLYEFVIELSGADLPKSESSRQLLVPKMKKLPSKMFRSIIHDKDFEVSLAYESEHLLPPGVTSPLIAQYQISGLADASEKYSSRNLSSPIKANVHFSLSRSGVLSLDRADAVVEITEWVEVPRKNLTIENSTISSNVSDESSASNNSEESSESVQSDSGINKTSNTSAEEQAAAEPATEKKLKKRTFRVPLKIVEKITGAGMSLSKDFLAEAKTKLQALDKKDAERKRTAESKNNLEGYIYTTKEKIETLEEFEKVSTSEERKSFVEKLDEVQDWLYTDGEDANATEFEERLDQLKAVGDPIFFRLKELTARPAAVEHARKYLIELKQIVEEWKSKKSWLPKERVDEVINIAEKLKNWLDEKETEQKKTSGFSKPAFTSEEVHLKVFELQNKVASINRIPKPKPKIQKSTKNESESNEQNTDTDNSDSTSTDSSSQSDESANPSKGESEESVDEQPEKHDEL 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02224 895 MobiDBLite consensus disorder prediction 565 614 - -
Vifa2g02224 895 Gene3D - 28 416 - -
Vifa2g02224 895 Gene3D - 211 398 - -
Vifa2g02224 895 PANTHER HSC70CB, ISOFORM G-RELATED 24 869 - -
Vifa2g02224 895 FunFam Heat shock 70 kDa protein 4 265 350 - -
Vifa2g02224 895 Pfam Hsp70 protein 27 737 IPR013126 GO:0005524|GO:0140662
Vifa2g02224 895 SUPERFAMILY Actin-like ATPase domain 216 417 IPR043129 -
Vifa2g02224 895 MobiDBLite consensus disorder prediction 852 875 - -
Vifa2g02224 895 Gene3D Actin; Chain A, domain 4 265 350 - -
Vifa2g02224 895 Gene3D - 92 145 - -
Vifa2g02224 895 MobiDBLite consensus disorder prediction 876 895 - -
Vifa2g02224 895 MobiDBLite consensus disorder prediction 565 605 - -
Vifa2g02224 895 ProSitePatterns Heat shock hsp70 proteins family signature 3. 372 386 IPR018181 -
Vifa2g02224 895 Gene3D - 637 750 IPR029048 -
Vifa2g02224 895 PRINTS 70kDa heat shock protein signature 57 69 - -
Vifa2g02224 895 PRINTS 70kDa heat shock protein signature 25 38 - -
Vifa2g02224 895 PRINTS 70kDa heat shock protein signature 165 185 - -
Vifa2g02224 895 PRINTS 70kDa heat shock protein signature 369 385 - -
Vifa2g02224 895 PRINTS 70kDa heat shock protein signature 401 421 - -
Vifa2g02224 895 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 664 746 IPR029048 -
Vifa2g02224 895 SUPERFAMILY Actin-like ATPase domain 24 210 IPR043129 -
Vifa2g02224 895 CDD HYOU1-like_NBD 28 416 - -
Vifa2g02224 895 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 426 572 IPR029047 -
Vifa2g02224 895 MobiDBLite consensus disorder prediction 829 895 - -
Vifa2g02224 895 FunFam Heat shock 70 kDa protein 4 637 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02224 Vifa-Chr2 576299282 576307007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02224 1 543 Miscellaneous Gene Families AT5G28540 27.986 3.40e-60 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02224 K09486 - gmx:100786898 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02224 2 576299282 576307007 Vifa2g02224 2 576299282 576307007 ECH
Vifa5g00167 5 22174820 22178550 Vifa2g02224 2 576299282 576307007 PCT