Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02217 ATGGCTTTCAGATCATCTTCTTCCGTTTGTTTTGATTGGTTTGTCGGACCAAATCCTAGTGATGATCGATTCATGATTGCTCAAAAAAATATTTGTCCCAAAAAACCAAAGAACTCGACTCTATTTGTGGCAAAAGGTTTAACTATGAATATAAGGAAAAATGATGTGATGATGAGTAGTACTGTTCCAGAAACTGCAAATTCTTCTCCTCCTCCTCCTCCACTTATAAGAGCTTCTTCTTTCTCTCCACACTTACTCCAAGGATTAATCCTCCAACAACCTATCGTTATTATTCCTCTAATTCCTCTCCCTCGTCGTTTGGATTTTGCTGTGCAATTCTTGGATAAACTTCCTAGAATTTTGTTTGATGAGGATTTACAAGCAAGGGATTCAATATGTTGTGTTTGTTTGGGAGAATTTGAGTTGAAAGAAGAGTTGCAACAGATTCCATATTGCAAGCATGTGTTCCACATTGATTGCATACATCATTGGCTACAAACAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACCACTACCAAGTTCCTTAATCCACCACCTCCTATTAATATTATTATATCAGACCAACCACACCAAGGTTCTATCAACTCTGATTCCTCCATTACAAATTTTCATCATTAG 651 0.3702 MAFRSSSSVCFDWFVGPNPSDDRFMIAQKNICPKKPKNSTLFVAKGLTMNIRKNDVMMSSTVPETANSSPPPPPLIRASSFSPHLLQGLILQQPIVIIPLIPLPRRLDFAVQFLDKLPRILFDEDLQARDSICCVCLGEFELKEELQQIPYCKHVFHIDCIHHWLQTNSTCPLCRCSIIPTTTKFLNPPPPINIIISDQPHQGSINSDSSITNFHH 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02217 216 CDD RING-H2_EL5-like 132 175 - -
Vifa2g02217 216 SMART ring_2 133 174 IPR001841 -
Vifa2g02217 216 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 103 180 - -
Vifa2g02217 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 180 IPR013083 -
Vifa2g02217 216 PANTHER RING-H2 FINGER PROTEIN ATL16 115 197 IPR044600 GO:0016567|GO:0016740
Vifa2g02217 216 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vifa2g02217 216 SUPERFAMILY RING/U-box 111 182 - -
Vifa2g02217 216 Pfam Ring finger domain 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02217 Vifa-Chr2 575384998 575387379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02217 106 206 C3H Transcription Factor Family AT1G33480 37.736 2.87e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02217 K19039 - gmx:100794298 185.267