Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g02217 | ATGGCTTTCAGATCATCTTCTTCCGTTTGTTTTGATTGGTTTGTCGGACCAAATCCTAGTGATGATCGATTCATGATTGCTCAAAAAAATATTTGTCCCAAAAAACCAAAGAACTCGACTCTATTTGTGGCAAAAGGTTTAACTATGAATATAAGGAAAAATGATGTGATGATGAGTAGTACTGTTCCAGAAACTGCAAATTCTTCTCCTCCTCCTCCTCCACTTATAAGAGCTTCTTCTTTCTCTCCACACTTACTCCAAGGATTAATCCTCCAACAACCTATCGTTATTATTCCTCTAATTCCTCTCCCTCGTCGTTTGGATTTTGCTGTGCAATTCTTGGATAAACTTCCTAGAATTTTGTTTGATGAGGATTTACAAGCAAGGGATTCAATATGTTGTGTTTGTTTGGGAGAATTTGAGTTGAAAGAAGAGTTGCAACAGATTCCATATTGCAAGCATGTGTTCCACATTGATTGCATACATCATTGGCTACAAACAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACCACTACCAAGTTCCTTAATCCACCACCTCCTATTAATATTATTATATCAGACCAACCACACCAAGGTTCTATCAACTCTGATTCCTCCATTACAAATTTTCATCATTAG | 651 | 0.3702 | MAFRSSSSVCFDWFVGPNPSDDRFMIAQKNICPKKPKNSTLFVAKGLTMNIRKNDVMMSSTVPETANSSPPPPPLIRASSFSPHLLQGLILQQPIVIIPLIPLPRRLDFAVQFLDKLPRILFDEDLQARDSICCVCLGEFELKEELQQIPYCKHVFHIDCIHHWLQTNSTCPLCRCSIIPTTTKFLNPPPPINIIISDQPHQGSINSDSSITNFHH | 216 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g02217 | 216 | CDD | RING-H2_EL5-like | 132 | 175 | - | - | |
Vifa2g02217 | 216 | SMART | ring_2 | 133 | 174 | IPR001841 | - | |
Vifa2g02217 | 216 | FunFam | Putative E3 ubiquitin-protein ligase RHA4A isoform A | 103 | 180 | - | - | |
Vifa2g02217 | 216 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 180 | IPR013083 | - | |
Vifa2g02217 | 216 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 115 | 197 | IPR044600 | GO:0016567|GO:0016740 | |
Vifa2g02217 | 216 | ProSiteProfiles | Zinc finger RING-type profile. | 133 | 175 | IPR001841 | - | |
Vifa2g02217 | 216 | SUPERFAMILY | RING/U-box | 111 | 182 | - | - | |
Vifa2g02217 | 216 | Pfam | Ring finger domain | 133 | 175 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g02217 | Vifa-Chr2 | 575384998 | 575387379 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g02217 | 106 | 206 | C3H Transcription Factor Family | AT1G33480 | 37.736 | 2.87e-21 | 87.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g02217 | K19039 | - | gmx:100794298 | 185.267 |