Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02214 ATGACGGAGGTAGCGAGAACAGTGGTTCATGAGGTTTTAGGAGATGGAATCGTCGACGTCGATGAACCAATTGTCAGTTACATCGTTAACGTCCTCGCCGACGAGGACTTCGACTTCGGACTCGACGGCGAAGGCGCCTTTGATGCTCTCGGAGATCTCCTCGTCGCAGCCGGATGTGTCCCCGACTTCTCCGAGTGTCGCTCCGTATGCAGCAAAATTTCTGATAGGTTTGGGAAGCACGGTTTGGTGAAGGCGAAACCGACAGTTCGAAGCCTCGCCGCACCTTTTCGAATGAACGAGGGATTAGACGACGGTGAAGCTCCGAAGAGGAAGCCGGAGCCTGTCGACGGTCCTCTTTTATCCGAACGCGATAAATTAAAGATCGAAAGGAGGAAGAGGAAAGACGAACGACAGAGAGAGGCAAAGTTCCAATTGCATTTGGCGGAGATGGAAGCGGTAAGAGCAGGGATGCCTGTTGCGTGTGTGAAGCACGAGAGCGGTGGTGGACATACTGTGAAGGATATTCATATGGATAATTTCACTATCTCTGTTGGTGGCCATGATCTCATCGTTGATGGTTCCGTTACGCTCTCTTTTGGAAGACACTATGGGCTTGTTGGCAGAAATGGGACGGGGAAAACAACTTTCCTGAGGCATATGGCCATGCATGCCATAGATGGCATTCCCAGGAATTGTCAGATATTGCACGTTGAGCAAGAAGTTGTTGGTGATAATACATCCGCTTTACAGTGTGTTCTTAATACTGACATTGAAAGAGCCCAGCTTCTGGAGGAAGAAGCTCAATTAATAGCGAAACAGAGAGAATCTGAGGACAGTACCGAAAAGGGCAACAATGCAAATGGAGGTGTGAAAGGAGATGCTATTTCACAAAGACTTGAGCAAATATATAAGAGGCTTGAGTTAATTGATGCTGATGCTGCCGAGTCACGGGCAGCATCTATACTTGCGGGTCTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCCACAAAAACATTTTCTGGAGGGTGGAGAATGCGAATAGCTCTTGCCCGTGCACTGTTTATAGAGCCTGATATGTTGCTTCTTGACGAACCTACGAACCATCTTGATCTTCACGCTGTCTTATGGCTTGAATCGTACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACACGGTAGTTACTGATATAATTCACTTACAAAACCAAAAGCTAACAACTTATAAAGGGAATTATGATACTTTTGAGAGGACTCGGGAAGAACAGATTAAAAACCAACAAAAAGCAGTAGAGGCACATGAGCGCTCAAGAGCTCATATGCAGACCTTCATTGACAAGTTTCGTTATAATGCCAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTCTGGATCGACTGGGCCATGTAGATGCAATTATTAATGATCCTGACTACAAGTTTGAGTTCCCAACTCCTGATGATAGACCAGGTGCACCTATAATAAGTTTCAGTGATGCATCATTTGGTTACCCTGGAGGACCCATTCTATTTAGGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGTAAATCTACTATACTTAAGTTAATTGCTGGGGAACTACAGCCAAGTTCTGGGACTGTCTTCCGTTCTGCCAAGGTTCGTATAGCAGTTTTCAGTCAGCACCATGTTGACGGACTAGACTTATCCTCAAATCCTCTTCTCTATATGATGCGCTGTTATCCTGGAGTTCCAGAGCAGAAACTTCGTGGTCACTTAGGTTCTTTTGGTGTTACCGGAAATCTTGCACTTCAACCGATGTATACTTTGTCAGGTGGTCAGAAAAGTAGAGTGGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCATCCAATCATCTGGATTTGGATGCTGTTGAGGCGCTGATTCAAGGTCTTGTGCTGTTTCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCATCTCTGGTAGCGTGGAGGAGCTGTGGATTGTATCCGAGGGAAGAGTGGCACCATTCCATGGCTCTTTCGGAGAGTATAAGCGGATACTTCATTCATCTTAG 2142 0.4524 MTEVARTVVHEVLGDGIVDVDEPIVSYIVNVLADEDFDFGLDGEGAFDALGDLLVAAGCVPDFSECRSVCSKISDRFGKHGLVKAKPTVRSLAAPFRMNEGLDDGEAPKRKPEPVDGPLLSERDKLKIERRKRKDERQREAKFQLHLAEMEAVRAGMPVACVKHESGGGHTVKDIHMDNFTISVGGHDLIVDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDNTSALQCVLNTDIERAQLLEEEAQLIAKQRESEDSTEKGNNANGGVKGDAISQRLEQIYKRLELIDADAAESRAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFERTREEQIKNQQKAVEAHERSRAHMQTFIDKFRYNAKRASLVQSRIKALDRLGHVDAIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFRNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRGHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGSFGEYKRILHSS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02214 713 MobiDBLite consensus disorder prediction 99 119 - -
Vifa2g02214 713 MobiDBLite consensus disorder prediction 102 119 - -
Vifa2g02214 713 FunFam ABC transporter F family member 3 127 448 - -
Vifa2g02214 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 439 IPR027417 -
Vifa2g02214 713 Pfam ABC transporter 406 487 IPR032781 -
Vifa2g02214 713 Pfam ABC transporter 194 367 IPR003439 GO:0005524
Vifa2g02214 713 MobiDBLite consensus disorder prediction 271 291 - -
Vifa2g02214 713 FunFam ATP-binding cassette sub-family F member 3 465 713 - -
Vifa2g02214 713 CDD ABCF_EF-3 175 412 - -
Vifa2g02214 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 712 IPR003439 GO:0005524
Vifa2g02214 713 ProSitePatterns ABC transporters family signature. 339 353 IPR017871 GO:0005524|GO:0016887
Vifa2g02214 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 700 IPR027417 -
Vifa2g02214 713 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 161 711 - -
Vifa2g02214 713 ProSitePatterns ABC transporters family signature. 622 636 IPR017871 GO:0005524|GO:0016887
Vifa2g02214 713 Pfam ABC transporter 520 650 IPR003439 GO:0005524
Vifa2g02214 713 CDD ABCF_EF-3 503 695 - -
Vifa2g02214 713 Gene3D - 467 712 IPR027417 -
Vifa2g02214 713 Gene3D - 137 448 IPR027417 -
Vifa2g02214 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 435 IPR003439 GO:0005524
Vifa2g02214 713 SMART AAA_5 199 412 IPR003593 GO:0016887
Vifa2g02214 713 SMART AAA_5 528 695 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02214 Vifa-Chr2 574743259 574756627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02214 465 664 Calmodulin-binding Proteins AT2G36910 27.155 4.96e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02214 K06158 - gmx:100790412 1233.78