Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02213 ATGGATTCTGAAACTGTTGATGTCGGTGTTGTGGAGAAAGATCCAACTTTGCGTTACGCACGGTATGATGAAATTTTAGGGAAAGGAGCTTTTAAGACTGTGTATAAAGCTTTTGATGAAGTAGATGGAATAGAAGTTGCTTGGAACCAAATTTGTATAGAGGATGTTATGCAATTACCTGAAAATTTGGAGAAGTTGTATTCTGAGGTTCATCTTCTCAAGTCACTGAAACAGGAAAATATTATTAAGTTGTATAGCTCTTGGGTGGATGAGAAGACCAGGACTATTAACATGATTACTGAATTGTTCACTTCTGGGAGTTTGCGACAGTATCGGAAAAAACATAAGAATGTGGATTTGAAAGCTATCAAGAACTGGGCGAGGCAGATTCTTCGTGGCTTGTGCTTTCTGCACAGTCACAATCCTCCTGTTATTCACAGGGATCTTAAATGCGATAACATTTTTGTTAACGGGAATACTGGGCAAGTTAAGATTGGTGATCTCGGATTGGCAATTATCATGCAGCAGCCTACTGCCCGGAGTGTTATTGGTACTCCAGAATTCATGGCTCCAGAGCTTTATGAGGAAGAATATAATGAACTTGTTGACATATATTCCTTTGGCATGTGTATCTTGGAAATCATCACCTGTGAGTACCCGTATAGTGAATGCAAAAACCCGGCGCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTGAATGATCCTGAAGTGAAGCAATTTATAGAAAAGTGTTTAGTTCCAGCATCTATGAGATTGCCTGCATCTGAATTGCTGAAAGACCCATTCCTCGCAACTGGAAACACAAAGATCCATCTCGATACCCCAATGCTGCTTAATCCCCCCATCAAATCAACGAATCCACCAGCATGTGAGCCCCATCCCATGGAGATAGATTCAAACCTCGGGCGTACATCACCTGGCTCCTCTGTGGAACAGATTAAAGAAACTTCTCAAGTTTCAATTGTTGATCTCCTGAGGAAGACAGAGAACAATGAGTTTAGGTTAAGAGGGGAGAAGAATGCCGATCCTACAATTTCACTTACACTGCGAATCGCTGATTCTCATGGTGGAGCTAGGAATATCCATTTTCCATTCTATATTGATTCCGACACAACAATTTCAATTGCCGAGGAAATGGTGGAACATCTGGAACTCAAGGATGAGGATGTAGCTGTCATTGCTGAGCTTATACACAACATGATTTTTGAGCTTGTGCCTGACTGGAAACCCTTATGTGATAACCTCTCGTCTGGAACAGATAATTTGTACAGGCCTTCAGAAGCTCAGAATGGGGGACAGTTAAACTGCCATTGGACATTGGGATCAGATGGTTTTGATATGAAGGCAATGTATGAGGATTTAGGTCAGTCACAGCGAGATGGGGAAGATCAGGACAAACAAGAATCTGTTTCATCAGATATTTCAGCTGAGTACGGGGTTGCTGTTGCCACTGATTCTGGAGGTGTAGAGCCTGATTGTTTTATTCTTCATGAATGTTGCAAGGGATCGAATGGCTTAAATTCCAATTCAGATGTCAGGATTTATGGTCAAGAAGATGGAAACAATTATCAATCAGAGAACTCAGTCTCAAGTTACATGTCAAGCAAATGTTCTCTTGACAATGATCATTTAGACAGGCTACAGTTGGAGCTCGAAGCAATTGAAACCCAGTATCAGCAAAGTTTTCATGAGCTTTTGAAGATGAGGGAGGAAGCCATAAAAAATGCCAAAAAGAGATGGATTTCAAAGAAGAATGCATCAGTTATATGA 1812 0.4084 MDSETVDVGVVEKDPTLRYARYDEILGKGAFKTVYKAFDEVDGIEVAWNQICIEDVMQLPENLEKLYSEVHLLKSLKQENIIKLYSSWVDEKTRTINMITELFTSGSLRQYRKKHKNVDLKAIKNWARQILRGLCFLHSHNPPVIHRDLKCDNIFVNGNTGQVKIGDLGLAIIMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEIITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASMRLPASELLKDPFLATGNTKIHLDTPMLLNPPIKSTNPPACEPHPMEIDSNLGRTSPGSSVEQIKETSQVSIVDLLRKTENNEFRLRGEKNADPTISLTLRIADSHGGARNIHFPFYIDSDTTISIAEEMVEHLELKDEDVAVIAELIHNMIFELVPDWKPLCDNLSSGTDNLYRPSEAQNGGQLNCHWTLGSDGFDMKAMYEDLGQSQRDGEDQDKQESVSSDISAEYGVAVATDSGGVEPDCFILHECCKGSNGLNSNSDVRIYGQEDGNNYQSENSVSSYMSSKCSLDNDHLDRLQLELEAIETQYQQSFHELLKMREEAIKNAKKRWISKKNASVI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02213 603 Gene3D Phosphorylase Kinase; domain 1 4 101 - -
Vifa2g02213 603 Coils Coil 558 578 - -
Vifa2g02213 603 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 359 415 IPR024678 GO:0004674|GO:0005524
Vifa2g02213 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vifa2g02213 603 FunFam probable serine/threonine-protein kinase WNK9 103 282 - -
Vifa2g02213 603 Gene3D Transferase(Phosphotransferase) domain 1 103 283 - -
Vifa2g02213 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 580 - -
Vifa2g02213 603 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02213 603 Gene3D - 357 445 - -
Vifa2g02213 603 CDD STKc_WNK 18 277 - -
Vifa2g02213 603 FunFam Probable serine/threonine-protein kinase WNK1 5 101 - -
Vifa2g02213 603 SUPERFAMILY Protein kinase-like (PK-like) 23 324 IPR011009 -
Vifa2g02213 603 ProSiteProfiles Protein kinase domain profile. 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02213 603 SMART serkin_6 20 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02213 Vifa-Chr2 574673368 574675743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02213 11 602 MAP Kinase Kinase Kinase AT5G41990 53.987 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa2g02213 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02213 K08867 - gmx:100272202 854.358