Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02212 ATGTTAAAGAAAAAGTCTAGTTTGGGTCGTCAAAAAATCCCTATTGAAAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGCCGTTCAGGTCTCTTCAAAAAGGCTAGTGAGCTTTGCACTCTATGCGGTGTGGAGATTGCAATTGTGGTTTTTTCTCCCGCTGATAAAGCATTCTCATTCGGTCATCCTGAAGTTGAGTCCATTGTTGATCGTTATCTGAGTCGAAACCTTCCACAAGAATCTAGTGCTCTCCAACTTGTTGAGGCTCATAGAAATGCTAATGTTCGTGATCTCAACGCGCAACTAACTCAACTTCTAAACCATCTCGCGATCGAGAAGAAGCAAGGAGAGGAGATAGATCATGTGAGGAAAGCTAGACAGATGCAAAACTGGTGGGAAAACCCTATTGATGAACTTGGCTTGAATGAATTGGTCCAATTAAAGGTTTCAATTGATGACCTAAAGAAGAATATTGGAAAAATTGCTAGCAAATGCATGATGGAACAATCCAATATGTTTCCACCAAATATTGGTGCTAATGGATTTGGCCGTTACAATAACTTTGAGAACAAACAAGGTGTAGGGATTAATATTGCTTCTACACTTCCTAATGCCTATAATTATCTTGATTTTCGACATGGATATCTTTGA 663 0.3816 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLSRNLPQESSALQLVEAHRNANVRDLNAQLTQLLNHLAIEKKQGEEIDHVRKARQMQNWWENPIDELGLNELVQLKVSIDDLKKNIGKIASKCMMEQSNMFPPNIGANGFGRYNNFENKQGVGINIASTLPNAYNYLDFRHGYL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02212 220 Coils Coil 99 119 - -
Vifa2g02212 220 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vifa2g02212 220 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vifa2g02212 220 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vifa2g02212 220 PANTHER MADS BOX PROTEIN 10 162 - -
Vifa2g02212 220 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vifa2g02212 220 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vifa2g02212 220 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vifa2g02212 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vifa2g02212 220 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Vifa2g02212 220 Gene3D - 88 176 - -
Vifa2g02212 220 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Vifa2g02212 220 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02212 Vifa-Chr2 574481922 574482584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02212 5 168 Type I MADS-box Gene Family AT5G60440 53.293 4.29e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g02212 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02212 - - tpra:123905348 337.035