Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02200 ATGTTGTGGTTGTGCACTTTCTTAGCTCTCCCCATTCTCTCATTTCTCTTTCACAGATGTATAACAACAGTTGGTAACACTCCCATTCACGCACCTCCTTCATATCCAATCATAGGTTGCCTTATCTCTTTTTACACAAATCGCCACCGGCTTCTAGATTTCTACACTCACCACCTCTCTCAATCTCCAACTCAAACCATCCTCCTCAAGCGTCTCAGCGCTCGCCGAACCATCTTAACTGCCAACCCTCTCAATGTTGAGTACATGCTCAAAACCAATTTCAAAAACTACCCTAAAGGAAAACCCTTCACTGAAGTCCTCGGCGACCTCCTAGGTGGCGGCATATTCAACGTAGACGGAAAGTTATGGTCAGATCAGCGCAAACTAGTCAGCCATCAATTCACCACGAGATCTCTCAAAGATTTCGTTGCAAAGACTCTTGAAGATGAAGTTCAACATAGACTTATTCCATTGCTTGAATTGGCATCTAACAGTAACCTTGTAATTGACATGCAGGATATTTTGACGAGACTCACCTTTGAAATAGTATGTAAAGTTTCACTTGGCTATGATCCTTGTTGTTTAGATTTATCTAAACACGTGCCACCTCTTTTGTCCGCGTTCGACAAAGCTTCCGAGATAAGCGCAATGCGTGCAACTTTACCAGTTCCTTTGATTTGGAAGATCAAGAGGATGCTTAATGTTGGATCGGAGAAATCACTTAGAGAATGTGTTAAAACGGTTCATGAATCGTTGATGGAGATAATTAGAAAGAAGAAGATGAAAGAAATTAATGAGAAGAAATATGTTAGTGGGAGTGATTTGTTGACAAAGTTGTTGGAGGCAGGGCATGATGAAATCACGGTGAGAGATATTGTTATTAGTATCGTCGTGGCAGGGAGAGATACGACGTCGGCGGCAATGACATGGTTCTTTTGGTTATTATCAAGGAATCGTAGCAAAGAGGAAGTGATAGTGAAAGGAGTGAGGGAAATATTTGGAGAAAAAAATAAGAAGAATGAGTTTGAGTTGATAAGGTCTTTTGATTATGATGATTTGAAAGAGATGAAGTATTTGAAAGCTTGTTTGTGTGAGTCAATGAGGTTATATCCGCCAGTGGCGTGGGATTCGAAGCATGCCGCGACGGATGATGTTTTGCCAGATGGAGCTAGGGTTGAGAAAGGTGATAGGGTGATTTATTTTCCTTATGGGATGGGGAGGATGGAGGCTTTATGGGGAAAAGATTGGAATGAGTTTAAACCAGACCGGTGGTTTGATGAACCGATCGGAGAAGGGAATAATAATAATGTGGTTTTGAAACATGTGAGTCCTTATAAGTTTGCGGTTTTTCAAGCTGGTCCGAGAATATGTCTTGGGAAAGAAATGGCTTTTATTCAAATGGAGTATGTTGCTGCTTCAATTCTCAACCAGTTTGAAATTAGGCCTGTGTTAGATCATCAACCAGTGTTTGTACCTCATCTTACTGCTCATATGGATGGTGGGTTCAAAGTGAACGTCCATAAGAGAGTTTAA 1533 0.4116 MLWLCTFLALPILSFLFHRCITTVGNTPIHAPPSYPIIGCLISFYTNRHRLLDFYTHHLSQSPTQTILLKRLSARRTILTANPLNVEYMLKTNFKNYPKGKPFTEVLGDLLGGGIFNVDGKLWSDQRKLVSHQFTTRSLKDFVAKTLEDEVQHRLIPLLELASNSNLVIDMQDILTRLTFEIVCKVSLGYDPCCLDLSKHVPPLLSAFDKASEISAMRATLPVPLIWKIKRMLNVGSEKSLRECVKTVHESLMEIIRKKKMKEINEKKYVSGSDLLTKLLEAGHDEITVRDIVISIVVAGRDTTSAAMTWFFWLLSRNRSKEEVIVKGVREIFGEKNKKNEFELIRSFDYDDLKEMKYLKACLCESMRLYPPVAWDSKHAATDDVLPDGARVEKGDRVIYFPYGMGRMEALWGKDWNEFKPDRWFDEPIGEGNNNNVVLKHVSPYKFAVFQAGPRICLGKEMAFIQMEYVAASILNQFEIRPVLDHQPVFVPHLTAHMDGGFKVNVHKRV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02200 510 SUPERFAMILY Cytochrome P450 29 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 Gene3D Cytochrome P450 16 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 FunFam Cytochrome P450 23 510 - -
Vifa2g02200 510 Pfam Cytochrome P450 32 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g02200 510 CDD CYP86A 65 502 - -
Vifa2g02200 510 PANTHER CYTOCHROME P450 21 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02200 Vifa-Chr2 571115248 571116780 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02200 1 509 Cytochrome P450 AT3G48520 57.393 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02200 K20665 - gmx:100810294 654.055