Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02187 ATGGAAGATTATTCACAAAACTCAAAATGGAAGTATCATGTTTTCTTGAGTTTTAGGGGAGAAGACACGCGCTTAGGCTTCACCGATCACCTATATGCAGCTTTGGTGCGCAAGAGTATAATAACTTTCAGAGATGATGAAGAACTTGCAAGAGGTGAAGTAATCTCACAGAAGCTACTCCATGCCATTGAAGAATCTCTCTCAGCAGTTGTCATTATCTCCAAAAATTATGCTAATTCAGCTTGGTGTTTGGATGAGTTAGTCAAGATTCTCGAATCTAAACGTTTGTCAGGAGAACAAGTGTTCCCTATTTTCTATGGTGTGGATCCCTCTGATGTAAGGAATCAAAAGGGAAGTTTTTACGAGGCTTTTAGGAAACATGAAGAAAATTTTTCCGAAAGCAAAGAGAAGGTGCAAAAGTGGAGAGATGCATTGAGAGAGGTCGCCAACTTGTCAGGCTGGGATTCTAAGGATCAACATGAAACGAAACTCATTGAAGAAGTTGTTGCACAAGTATGGAAAAAACTGGAACTCAAATTCCCATCCTATAACGATGGACTGGTTGCAATTGATGCAAGATTGAAAGAGTTATATTCAACTCTGAAGCTAGGATTGGAGGATGTTCGTTTCCTAGGGATATGGGGTATGGGTGGGATAGGCAAAACGACTCTTACTACAGCTCTTTACAAAAAAATCAAAGGCCAGTTTGATGTAAGTTGCTTCATTGCTAATGTTAGGGAGGTCTCAGGGGAAAGAAACGAAGGTCTGCTACAGTTGCAAATTAAAATTCTTTCTCATCTGAACATAAAAGGAATGGTAATTGAAACATTAAGCCAAGGAAAGGACAGCTTAAGAAACCTTTTATCCAACAAAAAGGTTCTTATTGTCCTTGATGATGTAAGTTCTAAAGGCCAACTTGAGAATTTGGCTGGAAGTCAGGAATGGTTTGGTCGAGGGAGTAGAATTATAGTTACGACTAGGGATAAGCACCTCTTGATATCGCATGTTGTATTGTTTGAAATGTATGAGAGTAAAGTCTTAAATAAAAGTGAATCCCTTCAACTTTTTTGTGAAAAAGCTTTTAAAGAAGATGCACCAAAAGAGGGTTATATGGAGTTGTCTAAAAGTGTTGTCGAATATGCTCGGGGCCTTCCTTTGGCTCTTGAAGTGTTGGGTTCTTTTCTTTGTGGAAGAAGTATATCTGATTGGAAAGATGCTTTAATCAAGATTAAACAAGTTCCACATGATGATATCCTAAACAAGCTTAGAATAAGCTATGACATGTTACAAGATGAACACAAGACCATATTTCTAGATATTGCCTGCTTTTTTAAGGGATGGTACAAACATAAAGTGATAAAAATATTAGAAAACTGTGGGCTTCATCCAACAGTTGGTATAAATGTTCTCATAGAAAAATCATTAGTAACTTTCGATGGAAGAGTTATCTGGATGCATGATATGCTTGAAGAAATGGGCAAAAGCATTGTTTTTCAAGAATCCCCTAATGATCCGGGTAGAAGAAGTAGACTGTGGTCTCTAGAGGATATTGATCAAGTGCTGAGAAAAAATAAGGGAACTGAAATTGTGCAAGGTATAGTTTTGAAACCATCGCCATCTCCGCTGTATAAAGTACATTGGGACCCTGAGGCATTCTCAAAGATGGGTAATCTTAGGTTACTCATTATATTATGTGATCTGCATCTTTCCCTTGGTTTGAAATATCTTTCTAGCTCACTAAAAGTGCTTATATGGTGGGGATATCCATTGAATGCTCTTCCACTTGGAGTTCAACTAGATGAGCTTGTACATTTACAAATGATCAACAGCAAAGTTAAACATTTGTGGAGTGAAAATGAGTATTTTGGAAAGCTGAAAGTAATTGATTTGAGTAACTCCAAAGATTTACGTCAAACTCCAAATATCTCTAGAATTCCAAATCTCGAAGAGTTGTATCTTAATGATTGTCCAAAACTTGTTGAAGTACACCAATCTATCAGACGACACAGAAAACTCATGATATTGAGCTTGATGGGATGCGTAGATCTGAAAACCTTTCCAGATAAATTGGAAATGTTTTCGTTGAAAATGCTATTTCTTTCTGATTGCTCAAAAATTAAAAAACTTCCTGATTTTGGGAAAAATATGACACGCATTACGGAACTTATCATAACGAATTGCGAGAATCTTCTATGCCTTCCAAACAGCATCAGTAACCTGAAAACTCTCAGAATTCTCAACATATCAAGATGTTCAAAAATTCGTACCCTGCCAGATGGTATAAATCAAAACAAGGCTTTGGTGGACATTGACTTGAGCAGAACCGCTATTAGAGAATTGGATCCATCCCTACTTCAGTTAGAAAATATTAAAAGATTATCTTTAAGTGGATGTAGCGGACCAGCATCCAACTCCAGCTGGGAGTTTCAGCTGCCTTTTGGCAAAAAGTTCAGGTTTTTCCCAGCTCACACAACGGGCTTAACATTGCCCCGTTTTGTATCAGGCCTTTCCTCATTAACTGTATTGGATTTAAGCCATTGTAATCTCACCGACGATTCAATTCCTCATGATATTGATTGCTTATCATCATTAGAGAATCTGATTCTAAGTGGAAACAGTTTTGTACGCCTACCTTCTCACTATCTTGCTAATCTTTCAAAGCTTCGATATCTTGAATTGGAAGATTGCCCGCAGCTCCAATCTTTACCAGTGCTTCCACCTCATGTACGCTTGTATGGAGCAGATTCAGATGTAAGGGAAGCTAATGCATTAGATCCACAAAAGATATGGAAGCTGTTTGAATCAAGTGACAAAGAACTCTTACAGTCATATGCGCCTCAAATGTTTGACTTCAGTTATCCTATGTACTTCAAAATCCCATCAAGATTTGATAATCAGAATTTTTTTCCATTGAGCTCGTCATATGTATCAAAACACGATTCATTTGCATCGGTAAGAGTGGACATCCCTGCTGATTGTCTTTCAAGTGACTGGTGGGGGGTGGCTGTACTTGTGGCCTTAGAAGCTGAAGCTCCTCGGGATTCAGAGGAAGGAGCTAAAAGTTTTTTTATGAGATTTATGCGCTTGTGTTGGAAATTTGATACTCTTGGACCTGAAGACAGCCCTTCCTTATCACTGTCTGCAGGTTCAACAGCATATAGTAATCTTTACCTCGTAACTATGGTAGTGAGTGGTGATTTTATATACATACAGAGACACCGAAGGGAGGACCGAAGATGGTTAATGCAGGAAGAGTTTAGCAAACATAGAAAGCCAGAGTTCAGGGAAAACAGTTCGTTGCGCTTTGAAGTGGAAGTAGGAGGATGGAAGATAAGGAAGTGTGGGTGGCATATGTTGTGCAAGGAAGATCATCTTGAAGATTTGCAAATGCTAAACAGCGGTGGACTTGTTGTAGGACCTTCAGATTCCGGGCATTCAGCTGGTATGAACAAATCATCTGTGGATGAATCCAAGGGGAAGGATACTACTGTTTTGGATGTGAAGAACATAGAAAGGTCCAACGAGAACTTCTCTTTGGGGAAAATGTTTCACATCATTAAACAAGGACTTGGTTTAAGTGTGCTAGCTTTGATATCAATGACGGTTGGGGCTACAATATTATGTTCGCCTATTCAAGGTTTGCGCTTAAACAAGTCAACCACAACAATCAAGACCATGTCTAATAAACTATTAAAATCGCATTGGATTACCTCTAATGCTATCGTACTTAAGGTCAATGCACCGCAAATTCAGCGCGGTCCTCATAACAGAAATGTGAGTCAACGGTTATCATTTCAACCGTACCAGCTACCAAGGAGGTTGAGTTTCTCTAAGAACCAATTTTGTTGTAACTTCACTAGATGA 3864 0.3864 MEDYSQNSKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLHAIEESLSAVVIISKNYANSAWCLDELVKILESKRLSGEQVFPIFYGVDPSDVRNQKGSFYEAFRKHEENFSESKEKVQKWRDALREVANLSGWDSKDQHETKLIEEVVAQVWKKLELKFPSYNDGLVAIDARLKELYSTLKLGLEDVRFLGIWGMGGIGKTTLTTALYKKIKGQFDVSCFIANVREVSGERNEGLLQLQIKILSHLNIKGMVIETLSQGKDSLRNLLSNKKVLIVLDDVSSKGQLENLAGSQEWFGRGSRIIVTTRDKHLLISHVVLFEMYESKVLNKSESLQLFCEKAFKEDAPKEGYMELSKSVVEYARGLPLALEVLGSFLCGRSISDWKDALIKIKQVPHDDILNKLRISYDMLQDEHKTIFLDIACFFKGWYKHKVIKILENCGLHPTVGINVLIEKSLVTFDGRVIWMHDMLEEMGKSIVFQESPNDPGRRSRLWSLEDIDQVLRKNKGTEIVQGIVLKPSPSPLYKVHWDPEAFSKMGNLRLLIILCDLHLSLGLKYLSSSLKVLIWWGYPLNALPLGVQLDELVHLQMINSKVKHLWSENEYFGKLKVIDLSNSKDLRQTPNISRIPNLEELYLNDCPKLVEVHQSIRRHRKLMILSLMGCVDLKTFPDKLEMFSLKMLFLSDCSKIKKLPDFGKNMTRITELIITNCENLLCLPNSISNLKTLRILNISRCSKIRTLPDGINQNKALVDIDLSRTAIRELDPSLLQLENIKRLSLSGCSGPASNSSWEFQLPFGKKFRFFPAHTTGLTLPRFVSGLSSLTVLDLSHCNLTDDSIPHDIDCLSSLENLILSGNSFVRLPSHYLANLSKLRYLELEDCPQLQSLPVLPPHVRLYGADSDVREANALDPQKIWKLFESSDKELLQSYAPQMFDFSYPMYFKIPSRFDNQNFFPLSSSYVSKHDSFASVRVDIPADCLSSDWWGVAVLVALEAEAPRDSEEGAKSFFMRFMRLCWKFDTLGPEDSPSLSLSAGSTAYSNLYLVTMVVSGDFIYIQRHRREDRRWLMQEEFSKHRKPEFRENSSLRFEVEVGGWKIRKCGWHMLCKEDHLEDLQMLNSGGLVVGPSDSGHSAGMNKSSVDESKGKDTTVLDVKNIERSNENFSLGKMFHIIKQGLGLSVLALISMTVGATILCSPIQGLRLNKSTTTIKTMSNKLLKSHWITSNAIVLKVNAPQIQRGPHNRNVSQRLSFQPYQLPRRLSFSKNQFCCNFTR 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02187 1287 Pfam TIR domain 11 183 IPR000157 GO:0007165
Vifa2g02187 1287 Gene3D - 176 337 IPR027417 -
Vifa2g02187 1287 Gene3D - 346 430 IPR042197 -
Vifa2g02187 1287 Pfam NB-ARC domain 206 412 IPR002182 GO:0043531
Vifa2g02187 1287 Gene3D Ribonuclease Inhibitor 766 909 IPR032675 -
Vifa2g02187 1287 FunFam Disease resistance protein (TIR-NBS-LRR class) 348 430 - -
Vifa2g02187 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Vifa2g02187 1287 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Vifa2g02187 1287 PRINTS Disease resistance protein signature 834 850 - -
Vifa2g02187 1287 PRINTS Disease resistance protein signature 287 301 - -
Vifa2g02187 1287 PRINTS Disease resistance protein signature 381 395 - -
Vifa2g02187 1287 PRINTS Disease resistance protein signature 210 225 - -
Vifa2g02187 1287 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Vifa2g02187 1287 SMART till_3 11 151 IPR000157 GO:0007165
Vifa2g02187 1287 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Vifa2g02187 1287 SUPERFAMILY L domain-like 485 904 - -
Vifa2g02187 1287 Gene3D - 5 175 IPR035897 -
Vifa2g02187 1287 Gene3D Ribonuclease Inhibitor 693 765 IPR032675 -
Vifa2g02187 1287 Gene3D Ribonuclease Inhibitor 543 692 IPR032675 -
Vifa2g02187 1287 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 692 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02187 Vifa-Chr2 567824556 567828991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02187 7 793 WRKY Transcription Factor Family AT4G12020 31.092 5.85e-91 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02187 - - psat:127083448 1828.53