Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02185 ATGGAAGATTATTCACAAAACTCAAAATGGAAGTATCATGTTTTCTTGAGTTTTAGGGGAGAAGACACACGCTTAGGCTTCACCGATCACCTATATGCAGCTTTGGTGCGCAAGAGTATAATAACTTTCAGAGATGATGAAGAACTTGCAAGAGGTGAAGTAATCTCACAGAAGCTACTCCATGCCATTGAAGAATCTCTCTCAGCAGTTGTCATTATCTCCAAAAATTATGCTAATTCAGCTTGGTGTTTGGATGAGTTAGTCAAGATTCTCGAATCTAAACGTTTGTCAGGACAACAAGTGTTCCCTATTTTCTATGGTGTGGATCCCTCTGATGTAAGGAATCAAAGAGGAAGTTTTGATGAGGCTTTTAGGAAACATGAAGATAAATTTTCCGAAAGCAAAGAGAAGGTGCAAAAGTGGAGAGATGCATTGAGAGAGGTCGCCAACTTGTCAGGCTGGGATTCTAAGGATCAACATGAAACGAAACTCATTGAAGAAGTTGTTGCACAAGTATGGAAAAAACTGGAACTCAAATTCCCATCCTATAACGATGGACTGGTTGCAATTGATGCAAGATTGAAAGAATTATATTCAACTCTGAAGATAGGATCGGAGGATGTTCGCTTCATAGGGATATGGGGCATGGGTGGGATAGGCAAAACGACTCTTACTACAGCTCTTTACAAAAAAATCAAAAGCCAGTTTGATGTAAGTTGCTTCATTGCTAATGTAAGGGAAGTCTCGGGGGAAAGAAACGACGGCATGCTACAGTTACAAAATAAAATTCTTTCTCATCTGAACATAAAAGGAATGGTAATTGAAACATTAAGCCAAGGAAAGGACAGCTTAAGAAACCTTTTATCCAACAAAAAGGTTCTTATTGTCCTTGATGATGTAAGTTCTAAAAGCCAACTTGAGAATTTGGCTGGAAGCCAGGAATGGTTTGGTCGAGGGAGTAGAATTATAGTTACGACCAGGGATAAGCACCTCTTGATATCGCATGCTGTATTGTTTGAAATGTATGAGAGTAAAATCTTGAATAAAAGTGAATCCCTTCAACTTTTTTGTGAAAAAGCATTTAAAAAGGACAAGCCGGAAGAAGATTATTTAGAGTTATCTAAGAGTGTGGTCGAATATGCTGGAGGCCTTCCTTTGGCTCTTGAAGTGTTGGGTTCTTTTCTCTGTGGAAGAAGGATATCTGATTGGGAAGACGCTTTAATCAAAATTAAACAAGTTCCACATGATGATATCCTAAACAAACTTCGAATAAGTTATGACATGTTAGAAGATGAACACAAGACTTTATTCCTAGATATTGCCTGTTTTTTTAAGGGATGGTATAAACATAAAGTGATACAAATATTGGAAAATTGTGGCTTTCATCCAACACTCGGAATAAATGTTCTTATAGAAAAATCACTAGTAACTTTCGATGGAAGAGTTATTGGGATGCATGATATGCTAGAAGAAATGGGTAAAACCATAGTTTTTCTAGAATCGTCTAATGATCCTGGAAAACGGAGTAGATTGTGGTCTCTAGAGGATATTGATGAAGTACTAAGAAATAATAAGGGAACTGAACTTGTTCAAGGTATTGTTTTGAAGTCATCACCATCTAGGTCATTTGAAGCGCGGTGGAACCCAGAGGCCTTCTCAAGGATGTCTAATCTTAGGTTACTCGTTATATTATGTGATTTGCATCTTTCACTTGGTCTGAAATGTCTTTCTAGCTCACTAAAAGTGCTTATATGGCGGGGATATCCAATGAATACTCTAACACTTGGAGTTCAACTGGATAAGCTCGTTCACTTACAAATGGTCAATAGTAAAGTCAAACAACTGTGGAATGGAACTCAGTATTTTAGAAAGCTGAGAGTAATTGATTTGAGCAATTCCAAAAATCTACGTCAAACTCCAAATGTCTCTGGAGTTCCATACCTTGAAGAGCTGCATCTTAATGATTGTACAGACCTTGTTGAAGTTCACCAATCTGTTAAAGAGCACAAAAAGCTTGAGATATTGAGCTTGGTAGGATGTACAAATCTGAAAACCTTCTCAAGTACATTGGAAATGGATTCCTTGAAAATGCTCATTCTATCTGATTGCTCAAACATTTCAAGACTTCCTGAATTTGGAAAAAATATGATAAGCATGTCAGTCCTTAATTTAATGCACTGCAAAAGTATTGTGTGCCTTCCAAACAGCATTAGTAACCTGAAGTCTCTCAAAATTCTCAATATATCCGGATGCTCAAAAATTTGTAGCCTGCCAGACGGTATAAGGCAAAACAAGGCTTTGGAGAATATTGACTTGAGTAGAACTGCTATTGGAGAAATGGATCCCTCCCTACTTCAATTAGGGAATCTCAAAATATTATCTTTAAGTGGATGTGGCTTGCCAGCTTCCGATTCTGGAGGGGACGTGAGTCGGCCAAATAAGAATCGGTTAAGGTATTTCTCAGCTGACACAGGCTTAATATTGCCTTCTATTTTCTCAGGTCTTTCCTCATTAACTGTTTTGGATTTGAGCTATTGTAATCTCACTGATGATTCAATTCCCCATGACATTGATGACTTATCATCATTGGAGAGACTAATTCTATCTGGGAATGATTTTCTGCGCCTACCCACTTGCTACTTTGTTAATCTTTCAAAGCTTCGCTATCTTGAATTGGAAGACTGTCCTCTGCTTCATCCTATACCATTGCTTCCACCACATGCATGCTTGTACTCAACAGATTCAGATGCAAAGGAATCTAAAATATTGGATCCTCAAAAGATATGGAAGTTGTTTGAATCAAGCAACAAAGAAGTCTTTCTCTCACCCGCGTCATTGATAGTTGATTACCCTTATCCTGTGTACACGGAAATCCCTTCAAGATTTGATAATCATAATTTTTTCCCCTTGAGCTCATCATATGTTTCAGAAGCTGACTCAATTGCATCGATAACAGTAAAGATCCCTACTGACTGTCATTCGAGTAATGGGTGGGCAGTTGCTGTATTTGTGGCCTTGGAGGAAATTGATGAAAGCTTTCAGGCCAAGGAAAAGCTGCTTGACAATACCAAACAAGATTTGGGGGGAAATCAATGCATTGGTTATTTAATCCTATTGATAGTAGTGATTTCGCTATTAATCTGTGTATGGTTTCGTATTCCAATAAAAACCACTACCAAACACATGCGCATGCGTTGGAACTTTGATACTTTAGAACCTGAAGATGGCTCATCCTTATCTCTCTTCTCTAGTTCAACAGCAAACAATAAACTGTACCTGTTCACAATGGTAGGGAGTGGTGATTTTATATACGTTCGGCGACACACAAGAGGGGAGCGAAAGTCCGTGCACAAATCCTTTAGCAAGCATCGGAAGCCAGAGTTGAGGGAAAACAGTTTGTTGCATTTTGAAGTGCAAGTGGAAGGGTGCAAGATAAGGAAGTGTGGATGGCGTGTGTTACACAAGGAAGATTATCTTGAAGACCTTAAAGAGGTGAACAACGGTGAACTTTCTATGGCACCTTCCGAGCATGTCAGTGGTATGTGCAAATCAACTGTGGATAAATTGAAGGGAGAGAATGCTACTGCTTTTGATGTGCAGAAGATAGAAAAATCCAATGAAAGTTTCTCTTTGGGAAAAATGTTTCAGAATATTAGACAGGGACTATGTTTAAGCATGCTAATTTTAATGTCAATGATGGTAGCTGCTACAGTATTCCCTTTGCCTGTGCAAGGTTTCGGCTTTAAAAAGCACACCACAACAAATGTTGTGCAGAATAAACCATTTAAGTCACATTGGGTTTCCCGCAAAACTGTATTAAAGGTCAATAGCAGTCCTAGATTAAATGTGAGCCATCGGTTGTCATTTCCACTATACCAGCTTCCAAGGAGGACAAATTTCTCTCAGACTCACTTTTGTTCTTACTTAACTAGATGA 3936 0.3849 MEDYSQNSKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLHAIEESLSAVVIISKNYANSAWCLDELVKILESKRLSGQQVFPIFYGVDPSDVRNQRGSFDEAFRKHEDKFSESKEKVQKWRDALREVANLSGWDSKDQHETKLIEEVVAQVWKKLELKFPSYNDGLVAIDARLKELYSTLKIGSEDVRFIGIWGMGGIGKTTLTTALYKKIKSQFDVSCFIANVREVSGERNDGMLQLQNKILSHLNIKGMVIETLSQGKDSLRNLLSNKKVLIVLDDVSSKSQLENLAGSQEWFGRGSRIIVTTRDKHLLISHAVLFEMYESKILNKSESLQLFCEKAFKKDKPEEDYLELSKSVVEYAGGLPLALEVLGSFLCGRRISDWEDALIKIKQVPHDDILNKLRISYDMLEDEHKTLFLDIACFFKGWYKHKVIQILENCGFHPTLGINVLIEKSLVTFDGRVIGMHDMLEEMGKTIVFLESSNDPGKRSRLWSLEDIDEVLRNNKGTELVQGIVLKSSPSRSFEARWNPEAFSRMSNLRLLVILCDLHLSLGLKCLSSSLKVLIWRGYPMNTLTLGVQLDKLVHLQMVNSKVKQLWNGTQYFRKLRVIDLSNSKNLRQTPNVSGVPYLEELHLNDCTDLVEVHQSVKEHKKLEILSLVGCTNLKTFSSTLEMDSLKMLILSDCSNISRLPEFGKNMISMSVLNLMHCKSIVCLPNSISNLKSLKILNISGCSKICSLPDGIRQNKALENIDLSRTAIGEMDPSLLQLGNLKILSLSGCGLPASDSGGDVSRPNKNRLRYFSADTGLILPSIFSGLSSLTVLDLSYCNLTDDSIPHDIDDLSSLERLILSGNDFLRLPTCYFVNLSKLRYLELEDCPLLHPIPLLPPHACLYSTDSDAKESKILDPQKIWKLFESSNKEVFLSPASLIVDYPYPVYTEIPSRFDNHNFFPLSSSYVSEADSIASITVKIPTDCHSSNGWAVAVFVALEEIDESFQAKEKLLDNTKQDLGGNQCIGYLILLIVVISLLICVWFRIPIKTTTKHMRMRWNFDTLEPEDGSSLSLFSSSTANNKLYLFTMVGSGDFIYVRRHTRGERKSVHKSFSKHRKPELRENSLLHFEVQVEGCKIRKCGWRVLHKEDYLEDLKEVNNGELSMAPSEHVSGMCKSTVDKLKGENATAFDVQKIEKSNESFSLGKMFQNIRQGLCLSMLILMSMMVAATVFPLPVQGFGFKKHTTTNVVQNKPFKSHWVSRKTVLKVNSSPRLNVSHRLSFPLYQLPRRTNFSQTHFCSYLTR 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02185 1311 Coils Coil 1006 1026 - -
Vifa2g02185 1311 Gene3D Ribonuclease Inhibitor 509 689 IPR032675 -
Vifa2g02185 1311 SMART till_3 11 151 IPR000157 GO:0007165
Vifa2g02185 1311 PRINTS Disease resistance protein signature 287 301 - -
Vifa2g02185 1311 PRINTS Disease resistance protein signature 381 395 - -
Vifa2g02185 1311 PRINTS Disease resistance protein signature 738 754 - -
Vifa2g02185 1311 PRINTS Disease resistance protein signature 210 225 - -
Vifa2g02185 1311 Gene3D - 5 175 IPR035897 -
Vifa2g02185 1311 Gene3D - 176 337 IPR027417 -
Vifa2g02185 1311 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Vifa2g02185 1311 Pfam TIR domain 11 183 IPR000157 GO:0007165
Vifa2g02185 1311 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Vifa2g02185 1311 SUPERFAMILY L domain-like 545 902 - -
Vifa2g02185 1311 Gene3D Ribonuclease Inhibitor 815 904 IPR032675 -
Vifa2g02185 1311 SUPERFAMILY "Winged helix" DNA-binding domain 417 521 IPR036390 -
Vifa2g02185 1311 FunFam Disease resistance protein (TIR-NBS-LRR class) 348 430 - -
Vifa2g02185 1311 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Vifa2g02185 1311 Pfam Leucine rich repeat 829 873 IPR001611 GO:0005515
Vifa2g02185 1311 Pfam NB-ARC domain 195 412 IPR002182 GO:0043531
Vifa2g02185 1311 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 756 IPR044974 GO:0006952
Vifa2g02185 1311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
Vifa2g02185 1311 Gene3D - 346 430 IPR042197 -
Vifa2g02185 1311 Gene3D Ribonuclease Inhibitor 690 811 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02185 Vifa-Chr2 567357727 567362148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02185 7 790 WRKY Transcription Factor Family AT4G12020 30.292 2.46e-93 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02185 - - psat:127083448 2375.51