Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02167 ATGGATGTAATCTTTGAAGTGCAAAGAGGAACACAATTCTCAATTGAAGTGGGTTTTTTCGACACTGTTTTTGAAATCAAAGAAAAAGTTCAAAAGTACCATGGAATTCAAATCTCTAAACAAACCCTAATTTTCAATGGTCAGATTCTTCAAGACGATGGCGACATTTGGAAGTACGAGATTTTTCAAAACTCTCGCATTCATCTTATGGTTACCGCCGCAGATTTTGATAATTCAAAACTACCAATAGATCATGATAACAAATTTCACCTCAACGTCAAAAATCCTTCTTTCATATCACACATTCCTAAGAAAATGGATAAAAACAATACCCCTTTAAAGCTAAAAGAAAAAATTCATGATATTGATCAAAACAATGTCCCATTGAGCAAAGTCATGTTGCATGCAGCTGAAACCAAATTGCATGATAATCAGTTCTATTGTGATTGTGGTGTTTTAGAGAAGAGTGAAATTGAGTATATTTTTAAGCCACGTGAATTGACAACACCTGCAATGGTTGATGGGAGAGGCAAAGGAGGAAGAGCATGGAAGAAGTTGAAGCATATGGTTTTGCCTAAAATGGAACAAAGAAAGTAG 597 0.3484 MDVIFEVQRGTQFSIEVGFFDTVFEIKEKVQKYHGIQISKQTLIFNGQILQDDGDIWKYEIFQNSRIHLMVTAADFDNSKLPIDHDNKFHLNVKNPSFISHIPKKMDKNNTPLKLKEKIHDIDQNNVPLSKVMLHAAETKLHDNQFYCDCGVLEKSEIEYIFKPRELTTPAMVDGRGKGGRAWKKLKHMVLPKMEQRK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02167 198 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 76 - -
Vifa2g02167 198 Gene3D - 88 163 - -
Vifa2g02167 198 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa2g02167 198 SMART ubq_7 89 163 IPR000626 GO:0005515
Vifa2g02167 198 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vifa2g02167 198 Gene3D - 1 73 - -
Vifa2g02167 198 ProSiteProfiles Ubiquitin domain profile. 1 72 IPR000626 GO:0005515
Vifa2g02167 198 Pfam Ubiquitin family 6 72 IPR000626 GO:0005515
Vifa2g02167 198 FunFam Ubiquitin-like superfamily protein 1 72 - -
Vifa2g02167 198 ProSiteProfiles Ubiquitin domain profile. 89 163 IPR000626 GO:0005515
Vifa2g02167 198 SUPERFAMILY Ubiquitin-like 77 163 IPR029071 -
Vifa2g02167 198 SUPERFAMILY Ubiquitin-like 2 73 IPR029071 -
Vifa2g02167 198 CDD Ubl_ubiquitin_like 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02167 Vifa-Chr2 564432492 564433088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02167 1 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.394 1.01e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02167 - - psat:127097496 255.758