Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02164 ATGTCTTCCTTGCTTTCCATGTACCAATCCAAAGGGGTGGAAGAGAGGAATGAAACAAAAGGCTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAACAAGAAGATAGCTATGAAGATGGTAACTTAATGTTGGAGAAGAAAAGAAGACTTGGTTATGATCAAGTTAAAGCTTTAGAAAAGAGTTTTGAGTTGGACAACAAGTTAGAGCCAGAGAGAAGAATGAAGCTAGCTGAAGAATTAGGGTTGCAACCTCGGCAAGTTTCGATTTGGTTTCAAAATCGTCGAGCTCGGTCGAAAACGAAACAATTGGAAAGAGATTACGGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATCAAACTCTTACTCTAAAGTTAAGAGAGTTGAAAGAGAGAATGTTGAGAGTTGGAAGAAATGAGTTAGAAAAGGGAGGTTCAGAAAGCAATTCAAGTGGTGTGATTAAAGAAGAAGGTAATGTTGATTGTTCAATGATAAATTATGTTCATTACTATGATGATTCAAGAAGGTCTCATGAGAGTGTGTTTCAGAATCAGTTTATGAGAATTGAGGAGCAGAATTTCTTTAGTAATAATGGGGAAATATTCAGTTTCTTCTCTGTTGATCAATCACCTACTTTGTAA 675 0.3541 MSSLLSMYQSKGVEERNETKGYSEEFQAMLDRLEQEDSYEDGNLMLEKKRRLGYDQVKALEKSFELDNKLEPERRMKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENQTLTLKLRELKERMLRVGRNELEKGGSESNSSGVIKEEGNVDCSMINYVHYYDDSRRSHESVFQNQFMRIEEQNFFSNNGEIFSFFSVDQSPTL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02164 224 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Vifa2g02164 224 CDD homeodomain 48 104 IPR001356 GO:0003677
Vifa2g02164 224 PRINTS Lambda-repressor HTH signature 83 99 IPR000047 GO:0003677
Vifa2g02164 224 PRINTS Lambda-repressor HTH signature 74 83 IPR000047 GO:0003677
Vifa2g02164 224 SMART HOX_1 46 107 IPR001356 GO:0003677
Vifa2g02164 224 SUPERFAMILY Homeodomain-like 48 114 IPR009057 -
Vifa2g02164 224 Coils Coil 116 143 - -
Vifa2g02164 224 Pfam Homeodomain 49 101 IPR001356 GO:0003677
Vifa2g02164 224 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g02164 224 FunFam homeobox-leucine zipper protein ATHB-6-like 51 97 - -
Vifa2g02164 224 Gene3D - 53 101 - -
Vifa2g02164 224 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Vifa2g02164 224 Pfam Homeobox associated leucine zipper 103 144 IPR003106 GO:0006355|GO:0043565
Vifa2g02164 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 189 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02164 Vifa-Chr2 562462316 562463232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02164 11 157 Homeobox Transcription Factor Family AT5G65310 53.797 3.08e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa2g02164 Homeodomain 2.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02164 K09338 - cave:132184564 220.32