Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02158 ATGGAACAACAACAGCAACCCAGATTCACCTTCTTCACTTCTCTTCCCTTATTCATCTTCTTCTTCCTAGCAGCTTCAATCCCATCCACAGCACAATCCAAATGCACAAAAGGCTGTTCATTAGCTTTGGCCAACTTCTACATAATCCAAGGCACCAACTTCTCATATATCACAAGTATTATGAAATCCTCAATTCTCACTAAACCAGAAGATATAGTTGATTACAACAGAGAAACTGTCCCTAACAAAGACATCATTATAGCCGGCGAACGAGTCAACATTCCGTTCCCATGTGATTGCATTAACGACGAATTTCTTGCTCATACTTTTAGTTACGATGTTCAAACGGGCGACACGTATGAGTCTGTTGCTGGATCCAATTATGCTAATTTAACCAGTGTTCAAGAGCTGAGAAACTTCAATAGTTATCCACCGAATAATATTCCTGATACTGGAACGTTGAATGTTACTGTTAATTGTTCTTGTGGGGATAGGGAAATTGGGGATTATGGGTTGTTTGTTACTTATCCTCTTAGGCCTGGGGAAACTTTGGGGTCGGTTGCGAATTCGACTAAACTTGATCCAGGGTTGCTGCAGAGGTATAATCCTGGTGTGAATTTTAATCAAGGGAGTGGACTTGTTTTTATTCCGGGCAAAGATAAAAATGGTAGCTATGTATTTTTTGATACCAGTCCAGGAGGTCTTGCTGGCGGGGCTATTGCTGGAATAGCTGTTGGAATAGTTGTTCTTCTTTTAGTGGCAGCTGCTGTATATTTTGGATATTTCCGAAAGAAGAAGATACAGAGGGAGGAATCTCTTTCACGAGATTCCGCTTCACTTTTCCCTCAGGATGGGAAGGATGAAACTTCTCATAATGCTGTGATCACCGGCATAACAGTCGACAAATCAGTTGCATTCTCATATGATGAACTGGCAGCTGCCTCAGATGACTTTAGCATGGCTAATAAAATTGGTCAAGGAGGTTTTGGCTCTGTCTACTATGCAGAGCTGAGGGGAGAGAAAGCTGCAATAAAAAAGATGGATATGCAAGCAACAAAGGAATTTCTCGCTGAATTGAATGTCCTGACACGCGTTCATCATCTTAACTTGGTGCGGTTGATTGGATATAGTATTGAGCGCTCTCTTTTCCTTGTCTATGAATACATCGAGAATGGAAACTTGAGTCAACATCTGCGGGGTTCAGGTAGAGATCCACTGCCATGGGCTACACGTGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATCCATGAGCATACAGTGCCTGTATATATCCATCGTGACATAAAGCCAGCAAATATATTGATAGATAAAAACTTCCGGGGGAAGGTTGCTGATTTTGGATTAACCAAACTGACGGAAGTTGGAAGCTCATCACTTCCCACTGGTCGTCTTGTCGGCACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTTTCTCCCAAAGTAGATGTTTATGCCTTCGGAGTTGTTCTTTATGAAATGATTTCGGCAAAGGAAGCAATTGTCAAGACCAGCGAATCTGTTGCTGCAGACTCAAAGGGACTTGTATCTATGTTTGAAGGAGTTCTTAGTCAGCCCGATCCTACCGAAGATCTTCGTAAAATAGTGGATCCAAGGCTTGGGGATAACTACCCTGTAGATTCAGTGCGAAAGATGGCTCAACTAGCGAAAGCGTGTACACAGGAAAATCCCCAACTGCGTCCGAGTATGAGATCCATTGTGGTTGCTCTTATGACACTTTCTTCAACTACAGACGATTGGGATATTGGCTCCTTTTACGAAAATCAAAACCTTGTGAATCTGATGTCAGGAAGATAG 1857 0.4227 MEQQQQPRFTFFTSLPLFIFFFLAASIPSTAQSKCTKGCSLALANFYIIQGTNFSYITSIMKSSILTKPEDIVDYNRETVPNKDIIIAGERVNIPFPCDCINDEFLAHTFSYDVQTGDTYESVAGSNYANLTSVQELRNFNSYPPNNIPDTGTLNVTVNCSCGDREIGDYGLFVTYPLRPGETLGSVANSTKLDPGLLQRYNPGVNFNQGSGLVFIPGKDKNGSYVFFDTSPGGLAGGAIAGIAVGIVVLLLVAAAVYFGYFRKKKIQREESLSRDSASLFPQDGKDETSHNAVITGITVDKSVAFSYDELAAASDDFSMANKIGQGGFGSVYYAELRGEKAAIKKMDMQATKEFLAELNVLTRVHHLNLVRLIGYSIERSLFLVYEYIENGNLSQHLRGSGRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKPANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYEMISAKEAIVKTSESVAADSKGLVSMFEGVLSQPDPTEDLRKIVDPRLGDNYPVDSVRKMAQLAKACTQENPQLRPSMRSIVVALMTLSSTTDDWDIGSFYENQNLVNLMSGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02158 618 Pfam LysM domain 112 152 IPR018392 -
Vifa2g02158 618 SUPERFAMILY Protein kinase-like (PK-like) 294 590 IPR011009 -
Vifa2g02158 618 Gene3D Transferase(Phosphotransferase) domain 1 389 608 - -
Vifa2g02158 618 Pfam Protein kinase domain 320 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02158 618 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Vifa2g02158 618 ProSiteProfiles Protein kinase domain profile. 318 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02158 618 CDD STKc_IRAK 324 587 - -
Vifa2g02158 618 SMART serkin_6 318 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02158 618 Gene3D Phosphorylase Kinase; domain 1 289 388 - -
Vifa2g02158 618 FunFam LysM receptor kinase 2 297 388 - -
Vifa2g02158 618 FunFam PTI1-like tyrosine-protein kinase 3 389 604 - -
Vifa2g02158 618 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 18 604 IPR044812 GO:0019199|GO:0045087
Vifa2g02158 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02158 Vifa-Chr2 561530847 561535994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02158 15 618 Receptor kinase-like Gene Family AT3G21630 58.226 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa2g02158 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02158 - K13429 gmx:100777781 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02158 2 561530847 561535994 Vifa2g02158 2 561530847 561535994 ECH