Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02155 ATGGCTTACAATCCGAACCAGAAACTCTTCTCAATTACTCTTCTCTTCTGCATAATCTTTTCACCAACAGAAACAGCATCAACATTCAGCCATTACAATTGCACAAGCATTCAAACATTTAATCCCAAAAGCACTTACAAAATCAACTTAAACTCACTCTTATCAACACTTTCATCCAAAGCTTCTGATACACTCAACCATGGCTACTATAACACTAGTATAATTAGTACTATTGATGAAACACAAGACACTGTCTATGGTTTATACATGTGCATTGGAAACACAAATCACTGTGGTGAATGTGTTAGAAACTCTACTAAAACACTCACCACAATGTGTGATTCTAAAGAAGCTATTATTTGGTCTGACGAATGTTTGGTTCGTTATTCGGATCGATCTTTCTTTGACACTTTAGAAGAATCTCCATCATGGTGTGTGAAGGACTCAATTGATTATCAAGGACCATTAGACGGATTCAACAAAATGCTAAGTTCTTTGATGGTGGATCTTGTGACACAAGCAAATGGAAATTCTAAGGGAAAAGTTAACAAAATTGTTCTCAAGAAAGCGATTTTCTACGAGGATAAATTCTTGTATGGACTTGCTCAGTGTATACCAAATCTCTCGAATGATAATTGCATGAAGTGTTTGAAGGATGCTATTGAATATCTTCAAACTTCATGTGCTAGAGGAAAGCTTAGAGGAAGTGTTTTATATCCAAGTTGTATTGTTAGATATGATCCTTCTCCATTTTTTGCATTAGCTAGAGGACAAGAAAAGGAAAATGGAGTACCGCGATATTCCATAATTTTACATGTTCTTGTTCCTATCACGATTTTCTCAGTCACGGTTTTCATTTTCACATATTATGTGCTATGTCGAAGAGCGAGGAAGAATCTCAAGTATCACAAAGAAAATTTTGGAGAAGACATTTCATCAGAAGTACATTCTTTGCAATTTGATTTTGATATAATTCGACTAGCAACAAACAAGTTCTCTGATGATAACAAGATAGGAGAAGGTGGTTTTGGAGATGTTTACAAGGGAATGTTTCCGAATGGATTTGAAATAGCAGTGAAGAGGCTCATAAGAAATTCAAGCCAAGGTGCTGTGGAATTTAAGAATGAAGTGTTGTTAATAGCCAAACTTCAACATAGAAATCTTGTGAGACTTTTAGGATTTTGCATTCAAAGGAATGAGAAGATACTCATTTATGAGTATATGCACAACAAAAGCCTTGATTACTATCTATTTAGTCCTGAAAATCATAAAAAACTAACTTGGCATGCACGTCACAAGATTATAAGAGGGATTGCGCGAGGTATTCTTTATCTACATGAGGATTCTCATCTGAAAATCATACATTGTGATCTTAAACCGAGCAATATTTTGTTGGATCATAAAATGAATGCGAAGATATCAGATTTTGGCTTGGCGAGGATTGTTGCAATTGATCAAATGCAAGGAAATACTAGTATAATTGCGGGGACATATGGCTACATGTCTCCCGAATATGCAATGCTTGGACAGTTTTCTGAGAAATCTGATGTATTCAGTTTTGGAGTCATAATTCTTGAGATTGTCAGTGGAAAAAGAAATATTGATTATAACGGAGTAGATTCCATCGATGACCTCGTGAGCCATGCTTGGAAGAAATGGTGGGAAAATAGGCAATTGGAACTATTGGATTCTGCATTGGTTTACTCATTTTCAGAAACAGAAGTAAATAGATGCATTCAAATAGGTCTACTATGTGTGCAAGAAAATCCAGATAGGAGGCCAACTATGGCAACAATTGCTTTGTATTTTAACTGTGATTCAATAGATCTACCACTACCTCAACAGCCGGCATTTTACATGCGTGGAAAAATCGAGTCAAAGGTGGCTAGTAAAAAACAGATGACGGGTCAACCTAGGAGTTATTCAGTGACAAGGTTTTAA 1941 0.3586 MAYNPNQKLFSITLLFCIIFSPTETASTFSHYNCTSIQTFNPKSTYKINLNSLLSTLSSKASDTLNHGYYNTSIISTIDETQDTVYGLYMCIGNTNHCGECVRNSTKTLTTMCDSKEAIIWSDECLVRYSDRSFFDTLEESPSWCVKDSIDYQGPLDGFNKMLSSLMVDLVTQANGNSKGKVNKIVLKKAIFYEDKFLYGLAQCIPNLSNDNCMKCLKDAIEYLQTSCARGKLRGSVLYPSCIVRYDPSPFFALARGQEKENGVPRYSIILHVLVPITIFSVTVFIFTYYVLCRRARKNLKYHKENFGEDISSEVHSLQFDFDIIRLATNKFSDDNKIGEGGFGDVYKGMFPNGFEIAVKRLIRNSSQGAVEFKNEVLLIAKLQHRNLVRLLGFCIQRNEKILIYEYMHNKSLDYYLFSPENHKKLTWHARHKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDHKMNAKISDFGLARIVAIDQMQGNTSIIAGTYGYMSPEYAMLGQFSEKSDVFSFGVIILEIVSGKRNIDYNGVDSIDDLVSHAWKKWWENRQLELLDSALVYSFSETEVNRCIQIGLLCVQENPDRRPTMATIALYFNCDSIDLPLPQQPAFYMRGKIESKVASKKQMTGQPRSYSVTRF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02155 646 Gene3D Transferase(Phosphotransferase) domain 1 408 607 - -
Vifa2g02155 646 ProSiteProfiles Protein kinase domain profile. 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02155 646 ProSiteProfiles Gnk2-homologous domain profile. 140 251 IPR002902 -
Vifa2g02155 646 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Vifa2g02155 646 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 626 - -
Vifa2g02155 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vifa2g02155 646 Pfam Salt stress response/antifungal 157 247 IPR002902 -
Vifa2g02155 646 Pfam Salt stress response/antifungal 34 131 IPR002902 -
Vifa2g02155 646 Gene3D Phosphorylase Kinase; domain 1 293 407 - -
Vifa2g02155 646 FunFam cysteine-rich receptor-like protein kinase 10 408 610 - -
Vifa2g02155 646 ProSiteProfiles Gnk2-homologous domain profile. 28 134 IPR002902 -
Vifa2g02155 646 Gene3D - 145 251 IPR038408 -
Vifa2g02155 646 Gene3D - 26 134 IPR038408 -
Vifa2g02155 646 CDD STKc_IRAK 338 600 - -
Vifa2g02155 646 SUPERFAMILY Protein kinase-like (PK-like) 316 620 IPR011009 -
Vifa2g02155 646 FunFam Cysteine-rich receptor-like protein kinase 10 294 407 - -
Vifa2g02155 646 SMART serkin_6 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02155 646 Pfam Protein tyrosine and serine/threonine kinase 335 600 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02155 Vifa-Chr2 560789977 560792712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02155 9 627 Receptor kinase-like Gene Family AT4G05200 41.705 6.50e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g02155 PK_Tyr_Ser-Thr 9.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02155 - - mtr:11443024 1080.47