Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02152 ATGTATAACCACTGCGATGGAAACAACTCTGAGTTGCCTCTTCAACCTATTGATAATGATAATTCTGATCAGCTTTCTCTGTCTTTCCGTGGTCAAGTCTATGTCTTTGAATCTGTCACTCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATCTGAACTGCCTCAAGCGGTTCTAACGGCGAAATCAAAATCAAATTACGCTTCTTTACCTAACTTATGTAAACTCAACCTTGTTGAAAGTCTCCGTTCCAACCTCGCCGTTCTTCTCCCCAACGTTGATTCGCTTTCAAGGGCTTCCAACGGGGAAGACGCCCACGTTCTCATTTTTGACCGCGTTGCTTCTCATCCAAACGCACTCCGCCGTACCCAGCCATCCCTCTTCAACCTGCGTCTCAGACTTCGCTCCGACTGCATCACAATCCAGCGGCGCCGGCGGCATACCCTCACTCCCTAG 462 0.487 MYNHCDGNNSELPLQPIDNDNSDQLSLSFRGQVYVFESVTPDKVQAVLLLLGGSELPQAVLTAKSKSNYASLPNLCKLNLVESLRSNLAVLLPNVDSLSRASNGEDAHVLIFDRVASHPNALRRTQPSLFNLRLRLRSDCITIQRRRRHTLTP 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02152 153 Pfam tify domain 21 52 IPR010399 -
Vifa2g02152 153 ProSiteProfiles Tify domain profile. 18 53 IPR010399 -
Vifa2g02152 153 PANTHER GATA TRANSCRIPTION FACTOR 28 17 68 IPR045280 GO:0006355
Vifa2g02152 153 SMART tify_2 18 53 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02152 Vifa-Chr2 560062025 560062726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02152 20 60 Tify Gene Family AT1G51600 75.610 8.39e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa2g02152 tify 7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02152 - K06677 zju:107433770 78.1814