Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02147 ATGGCTATGCAACAACACATAGGTTCTTCTTCTTCTTCATCTTCTATGGTAGCATCCTTGAAAAAATATGATGTTTTTATTAGCTTTCGTGGTGAGGATACTCGTAAAACCTTCACGAGCCATCTTTATGAAGCTCTTAACAAAAAAGTTCTAACATTTATTGACATTGAGCTTGAAAAAGGAGATGAGATCTCATCAGCACTCCACAAAGCCATTGAGGGGTCAGATGCTTCTATAGTCATATTTTCAAAGGACTATGCATCTTCAAAATGGTGTTTGAATGAACTCGTTAAGATTCTAGAATGCAAGAGAGATCGGAGACAGATAGTCATACCTGTTTTCTATGATATAGAACCATCTGATGTGAGGAATCAAACTGGGAGTTATCAGCAAGCTTTTGAAAAACATGAGCGAGATTTGAGACACAACAAAGACAAGTTGCAGAAATGGAAAGATGCACTCACCGAAGCAGCCAATTTATCTGGATGGAACTCTCAAGACTACGGGATGGAACCAATTTTTATTAAGGACATTGTGGAAGATGTTTTAAAAAAATTGAATCGTAGACATCCATTTGAAGTTAATAAGGAACTTGTTGGCATTGAGAAAAAGTATGAAAAAATGGAATCTTTGCTGGAAATTGGGTCAAATGATGTTAGAATCCTTGTATTATGGGGAATGGGAGGCATAGGAAAGACCACTCTAGCCAAACATTTATATGGTAGACTGTGTTCTCAATTTGAACGAACTTGCTTCATTGAAGATATAAGGGAAGAATCAACCAAGCATGGACTCAAGTTTGTACGCAACAAACTTTTTTCTACATTGTTGGAGCTTCCTCTCAATGCACCTTATGTAGAAACCCCAATTTCCATGAACAAACTTGCACATGAAAGAAGTCTCATTGTGTTGGATGATGTGGCAACCATAGAGCAAGCAGAAAATGTTAACATAGTTATTAATTGCTTGGGAGAGGGAAGTAGAGTCATTATCACAACTAGAGATATGCAGATATGTAGCCAATTTGACAGGTGTGAAATATATGAGTTTGAGGAAATGAATGTAGATGAATCTTTTCAATTATTCTGTTGGAATGCCTTTAGAGAAAAATGTCCTAAGGATGGATTTTATAATCTATCAAAAGAAGCAATTCTTTATTGCAGAGGCAATCCCCTGGCTTTGAAAGTTTTAGGTGCAAATTTTCGTACAAAAAAAAGTAAAGAAGCATGGAAAAGTGAATTGGAGAAGCTCAAAAAGATTCCCTATAGAAGAATCCATGATGTGTTAAAATTGAGTTTTGATGACTTAGATCCTACTCAACAAAACATATTTCTAGACATTGCATGCATCTCCACAGCACTACCGCAAAGTTATCATTCCATTAAAGCTAAATATTACCGAATAGCTGTATGGAATGCTTGCGATTTTTTTGCGGATAGTGGATTTGAAGTCCTTCTACATAAAGCACTCATATATTTTGATGATTTTGACGTTGACAAAAATGAAATTAAAATACATGGTTTGTTAGTAGAAATGGGGAAAGAGATTGTTAAAAAAGAATCTTCCCAAGAACCCGGAAGAAGAAGTCGATTGTGGGATCAAAAGGAAATATATGATGTATTGAAATATAACAAGGGTACTGAAGTTGTCGAAGCTATAGAATTTAAAGCATATGATATTGGAGATTTATACTTGAGATCTTATTCCTTTAAAAACATGTCCAACTTAAGACATCTTCATATCACTATAGATCTAGACACTGAAGTGCATCTCTTTCAAGGTCTTGAGTGGTTGTCTGATAAATTGAGGCATCTTTATTGGGATTTTTTTCCACTTGAGTCTTTTCCATCAACCTTTTGTGGAGAATGGCTTGTACAACTTACAATGAAGTCTAGCAATCTTAAAAAGCTCTGGGAGGGAATTCAGAGGCTTGACAGTCTAATGATTCTTGATCTTGATAAATCCAAACACCTGGTTGAGATTCCAGATTTATCAAGGGCCCCAAATCTTCAAGTAGTATCCCTTCGTTATTGTGAGAGTCTCTGTCAACTTCATCCATCCATTTTTAGTGCCCCCAAGCTTAGAGAACTATATTTATCTGGTTGCACAAAGATTGAAAGCCTGAAAAATGACATTTATACAGAATCTCTCCAAATACTTGATCTCTCTGAATCTTCATCTCTTGCGGAATTTTTGGTGACATCAGACGAAATGATGGAGTTGTCTTTATGGGGCGCGGAATATTTGGTGACAGCGGAGGAAATGTTGGAGTTGTCTTTAGGGGGCACTGTTGTACATGGATTTTCTTCACTTACTAAACTCCACCTTACAGGATGCTCACAAATCAATACATCGAGTCTTTGGCTCATCCTTGATGGCACACCGTCTTTAAGAAGACTACATTTGAGAAAATGCCACAACTTAGAAACTCTCCCTGGCAACATCCATAACAATTCAATGTTGGAAACTCTTGATTTAGTTGGATGCCGGAAACTTAAGTACCTACCAAAGCTTCCAGTTAGCTTGCAATGTTTGTTAGCCATTAATTGCTTTCATTTGGACACTATTTCTACTCAACGATCAATACTTGAGAATATGTTACACAAACTCCATTCACCTGATGAGAACATGTTACACAACATGCCCCAGAGGAAAATGGCTTTTTTTTCCTTTCCAGGTGATCGAGTTCCTAGTGAGTTTTATTTTCATACAACAAAGGATTCCATAGTTATTCCTCCTATTCCAAAATATGGTTTGTGTGGTTTCGTCATTTGCATCATCTTCTCCGGAGGAATGAATGTTGATTTAGGTGAAGTTATTTGTACTATTTATCAACACACCGGAGAAATTGGCAAATACACTCCATTGTATTGGTTAGACGCATTACATTCAGATCATGTATCGTTAGGTTGTATAGGGTGTTATGATTCCAACTGGGTGAAGGCGGAGAGTGAAAGTGGAGGTGATCATTACAACCTTTCATTTCAATTCAGTTATTGTCAATATTTTGGGACGAAATCAAATAGGATCATTGGTTGTGGGGTAATCCCTGTATATAACTTGAATTATAGTGGAGTTGAAATTTTTGAAATACAATCCAACTCTCAACTATCTGATGAGTCTGATGATAATGAGTTACAATTCTTGGCCAAAGATGTTGATTGTCATCAACATTCAAAATTTGATATTAATGAGTCACAACACCAAGAAATTGGAGCTGAAAATGAAGATGACCAGCAACAGCTAATTATACCTCAGACAAAAAATATGGAAGAGTTGAATGATACCTCTTCTTGTTCATGTTCAATCGGTTCTTTTGAAATACAATCCACTGCTCAACCATCGGATGATTCTGATGATATTGAAGGTTTTGATGATTGTCATCGATATTCGATTGTTCATATTAATGAGTCACAACACCAAGAAATTGGAGCTGAAAATGAAGAGGACCAGCAACAACTAATTATTCCTCAGACAGAAAATATGGAGGAGTTGAATGATACATCTTCTTGTTCATGTTCAATTGGTCTTTTGTTGAAGCACATACTAGAAGAATCAAAACGTGTATTTCTCAAGCAAAGATAA 3585 0.3626 MAMQQHIGSSSSSSSMVASLKKYDVFISFRGEDTRKTFTSHLYEALNKKVLTFIDIELEKGDEISSALHKAIEGSDASIVIFSKDYASSKWCLNELVKILECKRDRRQIVIPVFYDIEPSDVRNQTGSYQQAFEKHERDLRHNKDKLQKWKDALTEAANLSGWNSQDYGMEPIFIKDIVEDVLKKLNRRHPFEVNKELVGIEKKYEKMESLLEIGSNDVRILVLWGMGGIGKTTLAKHLYGRLCSQFERTCFIEDIREESTKHGLKFVRNKLFSTLLELPLNAPYVETPISMNKLAHERSLIVLDDVATIEQAENVNIVINCLGEGSRVIITTRDMQICSQFDRCEIYEFEEMNVDESFQLFCWNAFREKCPKDGFYNLSKEAILYCRGNPLALKVLGANFRTKKSKEAWKSELEKLKKIPYRRIHDVLKLSFDDLDPTQQNIFLDIACISTALPQSYHSIKAKYYRIAVWNACDFFADSGFEVLLHKALIYFDDFDVDKNEIKIHGLLVEMGKEIVKKESSQEPGRRSRLWDQKEIYDVLKYNKGTEVVEAIEFKAYDIGDLYLRSYSFKNMSNLRHLHITIDLDTEVHLFQGLEWLSDKLRHLYWDFFPLESFPSTFCGEWLVQLTMKSSNLKKLWEGIQRLDSLMILDLDKSKHLVEIPDLSRAPNLQVVSLRYCESLCQLHPSIFSAPKLRELYLSGCTKIESLKNDIYTESLQILDLSESSSLAEFLVTSDEMMELSLWGAEYLVTAEEMLELSLGGTVVHGFSSLTKLHLTGCSQINTSSLWLILDGTPSLRRLHLRKCHNLETLPGNIHNNSMLETLDLVGCRKLKYLPKLPVSLQCLLAINCFHLDTISTQRSILENMLHKLHSPDENMLHNMPQRKMAFFSFPGDRVPSEFYFHTTKDSIVIPPIPKYGLCGFVICIIFSGGMNVDLGEVICTIYQHTGEIGKYTPLYWLDALHSDHVSLGCIGCYDSNWVKAESESGGDHYNLSFQFSYCQYFGTKSNRIIGCGVIPVYNLNYSGVEIFEIQSNSQLSDESDDNELQFLAKDVDCHQHSKFDINESQHQEIGAENEDDQQQLIIPQTKNMEELNDTSSCSCSIGSFEIQSTAQPSDDSDDIEGFDDCHRYSIVHINESQHQEIGAENEEDQQQLIIPQTENMEELNDTSSCSCSIGLLLKHILEESKRVFLKQR 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02147 1194 SMART till_3 22 160 IPR000157 GO:0007165
Vifa2g02147 1194 Coils Coil 133 153 - -
Vifa2g02147 1194 SUPERFAMILY "Winged helix" DNA-binding domain 424 542 IPR036390 -
Vifa2g02147 1194 Gene3D - 188 347 IPR027417 -
Vifa2g02147 1194 Gene3D - 353 437 IPR042197 -
Vifa2g02147 1194 Gene3D Ribonuclease Inhibitor 562 734 IPR032675 -
Vifa2g02147 1194 Gene3D Ribonuclease Inhibitor 753 890 IPR032675 -
Vifa2g02147 1194 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 782 IPR044974 GO:0006952
Vifa2g02147 1194 PRINTS Disease resistance protein signature 387 401 - -
Vifa2g02147 1194 PRINTS Disease resistance protein signature 221 236 - -
Vifa2g02147 1194 PRINTS Disease resistance protein signature 712 728 - -
Vifa2g02147 1194 PRINTS Disease resistance protein signature 294 308 - -
Vifa2g02147 1194 Pfam Leucine Rich Repeat 624 642 IPR011713 -
Vifa2g02147 1194 ProSiteProfiles TIR domain profile. 21 186 IPR000157 GO:0007165
Vifa2g02147 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 447 IPR027417 -
Vifa2g02147 1194 Pfam TIR domain 22 200 IPR000157 GO:0007165
Vifa2g02147 1194 Pfam NB-ARC domain 208 422 IPR002182 GO:0043531
Vifa2g02147 1194 SUPERFAMILY L domain-like 565 858 - -
Vifa2g02147 1194 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 163 IPR035897 -
Vifa2g02147 1194 Gene3D - 19 187 IPR035897 -
Vifa2g02147 1194 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02147 Vifa-Chr2 552438897 552444105 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02147 18 862 WRKY Transcription Factor Family AT4G12020 29.085 1.59e-81 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02147 - - psat:127083478 1119.38