Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02136 ATGAAGAAGGTTTCTCTTTATGCTTTTTTATTACTCAACTTTAGTCTTTTGGTTATTTTTCCATATAGCAAAGCTAGTCAGGCTGATAAACTTGATGAGTTGATTCTGTCTAGAAGCTCACAGAATCCTCCTAAGACTTTTTCATGGGAAGCTGAAGACGCATTGCAAACACAACCTTCTTCTGCTTATGTTGTACCTCCTCAAGAGGGGAAAAGGCTAGCTGACAAGATTGTCACATTGCCTGGTCAACCCTACGGAGTTAATTTTGACCAATACTCAGGCTATGTCACAGTTGATCATGGCACTGGAAGAGAACTTTTCTATTATTTTGTGGAGTCTCCCTCTAACTCTTCCACCAAACCTTTAATATTGTGGCTCAGTGGAGGACCTGGTTGTTCCTCACTGGGATATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTCAACTCTGATGGAAAAACTCTACACCGTAACCCATATGCTTGGAACGAAGTTGCGAATGTACTTTTCTTGGATTCTCCAGCAGGGGTAGGTTTTTCCTACTCAAACACAACTTCTGACTATGAAAAATCAGGAGATAAGACAACTGCAAAGGATGCTTATGTCTTCCTTATCAACTGGTTGGAGAGATTTCCACAGTACAAAACAAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGCTCCTCAGCTTGCATCCACTATTCTTCACAACAATAAACTCTATAACCAATTCATTATTAACCTCAAAGGCATTTCTATAGGAAATCCCTGGATTAATGATGCTACAGATTTAAAAGGGATATTTGATTACTTTTGGACTCATGCTTTGAACTCAGATGAAACTCATGAGTTGATTGACAAGTACTGTGACTTCAATTCTGAAAATGAATCAGCAATATGTACCAATGCAACAATAAGAGCTTCAAATGAGATAGGACACATAGATTTCTATAACATCTATGCTCCACAGTGTCATGATTCTTCTCTCAAAAATGGTTCAACTGGTTATGTAAGTAACGAATTTGACCCTTGTTCTGATTACTATGGTATTGCCTATCTAAATAGACCAGAGGTCCAAAAGGCTCTTCATGCAATACCTACTAATTGGACCTATTGCACTCGTGTTATTCGTAACTGGATAGACAGTCCAGTTACTGTCCTTCCCACCATCAATGGTGATACAGATGCAAGGGTTCCAGTAACATCTTCAAGATATTCAATCAACACTCTTAAGCTTCCTATCAACTCCGCTTGGCGACCATGGTATTCTGGAAAAGAGATTGGAGGATATGTTGTTGGATACAAAGGTTTGACATTTGTTACAATAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAGCCGGAACGAGCTTTGACTTTGATCTCGTCATTCATCTATGGAATTCCGCCTCCTGTTTCACCATCAAATTAA 1443 0.3971 MKKVSLYAFLLLNFSLLVIFPYSKASQADKLDELILSRSSQNPPKTFSWEAEDALQTQPSSAYVVPPQEGKRLADKIVTLPGQPYGVNFDQYSGYVTVDHGTGRELFYYFVESPSNSSTKPLILWLSGGPGCSSLGYGAFEELGPFRVNSDGKTLHRNPYAWNEVANVLFLDSPAGVGFSYSNTTSDYEKSGDKTTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYAPQLASTILHNNKLYNQFIINLKGISIGNPWINDATDLKGIFDYFWTHALNSDETHELIDKYCDFNSENESAICTNATIRASNEIGHIDFYNIYAPQCHDSSLKNGSTGYVSNEFDPCSDYYGIAYLNRPEVQKALHAIPTNWTYCTRVIRNWIDSPVTVLPTINGDTDARVPVTSSRYSINTLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTIRGAGHLVPSWQPERALTLISSFIYGIPPPVSPSN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02136 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 181 IPR001563 GO:0004185|GO:0006508
Vifa2g02136 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Vifa2g02136 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 207 232 IPR001563 GO:0004185|GO:0006508
Vifa2g02136 480 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 170 IPR001563 GO:0004185|GO:0006508
Vifa2g02136 480 Pfam Serine carboxypeptidase 81 470 IPR001563 GO:0004185|GO:0006508
Vifa2g02136 480 ProSitePatterns Serine carboxypeptidases, serine active site. 221 228 IPR018202 GO:0004185
Vifa2g02136 480 Gene3D - 348 379 - -
Vifa2g02136 480 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 458 IPR001563 GO:0004185|GO:0006508
Vifa2g02136 480 ProSitePatterns Serine carboxypeptidases, histidine active site. 441 458 IPR033124 GO:0004185
Vifa2g02136 480 Gene3D alpha/beta hydrolase 72 330 IPR029058 -
Vifa2g02136 480 SUPERFAMILY alpha/beta-Hydrolases 77 473 IPR029058 -
Vifa2g02136 480 Gene3D - 380 471 - -
Vifa2g02136 480 FunFam Carboxypeptidase 71 330 - -
Vifa2g02136 480 FunFam Carboxypeptidase 377 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02136 Vifa-Chr2 551339454 551341534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02136 345 473 Calmodulin-binding Proteins AT2G22960 29.054 2.25e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02136 K16297 - mtr:11443022 796.578