Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02113 ATGAGCAACTTTGCTGTTTCTCCTTCATCTTCATCAATGATGCTGTTTCCCAAAAAATACGATGTTTTTCTTAGCTTTCGAGGTGAAGATACACGCGACAACATCACAAGCCATCTTTACGAAGCACTGAAGCAAAAGAAAGTTGAAACCTATATAGACTACAAGCTACAAAAAGGAGAGGGAATTGGACCATCACTCATCACAGCCATTGAAGAGTCACATGTTTCTGTTGTCATCTTCTCAGAAAACTACGCTTCCTCCAAGTGGTGTTTGGATGAAATTGTGAAGATCATGGAATGCAAAAAAGGTCGAGGACAGATTGTGATACCTGTGTTCTATAAAATAGATCCATCACATGTGAGAAACCAGAGAGGGACATATAAGGAATGGTTTGACAAACATGAGTTAGATCTACCGAGGAACAATAATCAGAGGTTGTTCAATTGGAGAAGTGCTCTCACAGAAGCAGCAAATTTGTCTGGTTGGGACTTTCAAACGTATAGGTCTGAATCTCAATTCATAAAAGACATCGTTAAAGATGTTTCGCAACGACTGAATCGTGTAAACCAATTCGAATTAAAGGGGTTTGTTGGAATAGAGGAAAACTATGAAGGAGTTAAATCATTATTGGAAATGGACTCAAAAAAAGTTCAAGTGATTGGTATATGGGGCATGGGTGGCATTGGCAAAACCACTCTAGCAATTGCTTTATATGCCAAACTCTCTTCTCATTTTGAAGGTCATTGTTTCTTAGAAAATGTTAGAGAACAAACAGAAAAAAACAGTATCAATTTCATGCGCAACAAACTTGTTTCAGAGCTCTTAGAGGAAGAAAATCTCCATGTTAATGTACCTAAAGTTGAATATCTTTCTGTTACCAATAGGCTTCGACGTAAAAAGGTTCTTATTGTGTTGGATGATGTGGCTAACTCTGAACAATTAGATGAATTAATCATTGATTATGATTGTTTAGGACTTGGAAGTAGAGTGATTGTAACTACTAGAGATAAACATATTGTTAGCATTGTTGATAAAATTTATGAGGTGAAGGAATTGAACAAACACAACTCTCTTGAGCTTTTTTGTTTGAAAGCATTCAAAGCAAAGGTTCCTAAAAGTGGATATGAAGAGCTCTCAAAAAATATTGTTGCCAATTGCAAAGGTAACCCTTTGGCTTTAAAAGTTTTAGGTGCACGGTTGCATTCGAGGAGTAAGCTAAAATGGAAAAGTGAATTGGAGAAGCTTAAGACGATTCCGGACATAAAAATTCAAAATGTGTTGAAATCGAGTTATGATGATTTGGATGATGATCAAAGGAATATATTTCTAGACATTGCATGCTTTGTCAAAGAAGAATCTAAAGATCGTGTAACAAATTTGTTTAAAGCTTATAATTTTTTCCCCGATATTGGGATAGATGATCTTGTAGAAAAGTCTCTTGTAACAATTTCAAATAAGGGTACAATACAAATGCATGACTTAATACAAGAAATGGGTTGGAATATCGTTCGTCAAGAATCTCCCAAAGATCCGGGGAGTAGAACTCGATTGTGGAAACCAAATGAAGTGTATGATGTCCTGAAATATAATAAGGGAACTAAAGTTGTAGAAGGCATAACTTTAGATGTGTCTAAGATTGAGGATCTACATTTGAGCTCTGATTCCTTTACAAATATGTTTGAAATGAGATATCTTAAATTCTATTATGGGAAGAAGAATGAAACAAGTAACATATATCTTCCCAACGGTCTGGATTCATTGTCTGACAAATTGAGGTACCTTGAATGGCATAGATACTGTCTGAAGTCTTTGCCATCTAAATTTAGTGCAAAATTGCTTGTAGAACTTTTGATGCCTTTCAGCAACCTTCAAAAGCTTTGGGATGGAGTTCAGGATCTTGCGAATTTGAAGGAAATTGACCTTAGATTCTGCAAAGAGCTAGTTGAGATTCCAGATTTGTCTAAGGCTAGAAATTTGGAATGGTTATCGCTTTCTCAGTGTAGAAATTTGCACGAAATCCATCCCTCCATTTTGTCACTCAACAAGCTTAAAAATCTCGAATTAGAAGGTTGTACAAAGATCGAAAGTCTAATTCAAATGGACAACAATCATTTAGAATCTCTCCAAAACATCCAACTTAGCAATTGCTCATCATTGAAAGAATTTTCAGTCACTTCAAACAAACTCGAGAAATTGTGGTTAGATGGTACTTCTATCCAAGAATTGTCCCCGTCGGTTTGGTGCTGCGAGAAACTGAAGATGATTGATCTACATAACTGTGACAATCTTGTGGGTTTTGGGGACAACATTCAAAACTATATAGGAATTGGATCTCTTAATACTATAGTCCTTTCAGGGTGCAAAGGACTGAATGCATCAAATCTTGGTTTCAACGTCAAATCATGGCAAGCAACTTTAACATCACTGAGTTTGGAAAATTGTTGCAACTTAGAGACACTCCCTGATAGCATTGGTTTATTATCATCATTACAATGCTTAAAACTAAGCGGAAGCAATGTTGAGAGTTTGTCCCCAAATATCAAAAACCTTAACAACCTTAAAGAGTTAAGGCTAGACAACTGCAAGAAACTAGTGTCTGTCCCGGAGCTTCCTTCGTCGTTGCGATTATTTAGTGCTATCAACTGCATTTCTCTAAAAACAGACCTTACTGCATTGGACATAGCCTTTGAACATAGACCTAAACCTCAACCGTATCCTCAGTCAGTGTTCTTCCCTGGTGCTCATGTTCCCAAGAGATTTAGCTATAAGGGTTCAACTTCTGAAGTAAATATTAAGCATCTTCCAGAATCTGGTTTATATGGTTTAGTTTTTTGTCTTGTTCTTTCAGGGTCAAATGATAAGTATGGAATTGTTCAATTTTCTGTTAACCAAAATACCAAAAAAATAGGTGGAAAAGCTACCTCATTGCGTAATCTGCATTTGGTTATGGATCATGTGTTTCTTTGGTATTTGGACATTAGGAGTGGTGCTAAACACATTTCTTTGCATAGCCAAATCGAAGAAAGTGGAGCATGGGATAATCCTTGTGATATATCATTTCAATTTTCACTTGAAAATGAGGAGGGAGAATGGTCAACAAAGAGGATAAGAGGGAGTGGAGTCTTACCACTTTATCACTTACAAGAATCTTTGGAGACCAACGATTTGCACCTCGAGCCTAAACCCGAACTTGAGCTAGATTCTTGTGATATAATATCCGAGCTAGAAAGTTTATTATGTGATAGTTACATGTCTTCTCCCATGTGCACTGACTCAACAACTATTTCAACACTTCTTGAAAATTTAGATACTCTTTTGGAGACACCACTTGAAATTCTCTCTTCAGACAATGAAGTGAAGCAAAAGTTCCATCAAATTTTGGAACAACTCGGCCAATTTGAAAAACAAATCCCTGCTAAGCTTCATCATGTCATTTGCAAGTTAAGAACTTTCACTGAAGGGGTTGATGTAAGATTTGGGAGTGCTCAAAAAACTATCCAAGATTATAATCTTCTGCTTCAATCAAGGACTGATATATCGAAGCAATTGGTAAGTGTCAAAGCTCGAGAATGCCAAAATAAATCGGAAACCTCTCGTGGTAAGAGAGAGTTTGAAAGGATCAATTCTGAGATTGTTGAACTAGAACAGAAGTTAAGTGGTCTTGTTGAGATTAGAGACAAGTTGAAAAGAGAATTGGAGCATTGTGATGTGATAGATAAAAACCTTAAGACAGAAGTTGCACAATGCAAGAGTGTGTTATTAAATCTGAAAGAGTCTGAGGTTTCTTACAAAGAGGCCTTAACTAATAAGAAGAAAGTTGAAGATGAATGGACTGATTTGAAAAAGAACTTTGCTACCAATAAGATTTGA 3870 0.3636 MSNFAVSPSSSSMMLFPKKYDVFLSFRGEDTRDNITSHLYEALKQKKVETYIDYKLQKGEGIGPSLITAIEESHVSVVIFSENYASSKWCLDEIVKIMECKKGRGQIVIPVFYKIDPSHVRNQRGTYKEWFDKHELDLPRNNNQRLFNWRSALTEAANLSGWDFQTYRSESQFIKDIVKDVSQRLNRVNQFELKGFVGIEENYEGVKSLLEMDSKKVQVIGIWGMGGIGKTTLAIALYAKLSSHFEGHCFLENVREQTEKNSINFMRNKLVSELLEEENLHVNVPKVEYLSVTNRLRRKKVLIVLDDVANSEQLDELIIDYDCLGLGSRVIVTTRDKHIVSIVDKIYEVKELNKHNSLELFCLKAFKAKVPKSGYEELSKNIVANCKGNPLALKVLGARLHSRSKLKWKSELEKLKTIPDIKIQNVLKSSYDDLDDDQRNIFLDIACFVKEESKDRVTNLFKAYNFFPDIGIDDLVEKSLVTISNKGTIQMHDLIQEMGWNIVRQESPKDPGSRTRLWKPNEVYDVLKYNKGTKVVEGITLDVSKIEDLHLSSDSFTNMFEMRYLKFYYGKKNETSNIYLPNGLDSLSDKLRYLEWHRYCLKSLPSKFSAKLLVELLMPFSNLQKLWDGVQDLANLKEIDLRFCKELVEIPDLSKARNLEWLSLSQCRNLHEIHPSILSLNKLKNLELEGCTKIESLIQMDNNHLESLQNIQLSNCSSLKEFSVTSNKLEKLWLDGTSIQELSPSVWCCEKLKMIDLHNCDNLVGFGDNIQNYIGIGSLNTIVLSGCKGLNASNLGFNVKSWQATLTSLSLENCCNLETLPDSIGLLSSLQCLKLSGSNVESLSPNIKNLNNLKELRLDNCKKLVSVPELPSSLRLFSAINCISLKTDLTALDIAFEHRPKPQPYPQSVFFPGAHVPKRFSYKGSTSEVNIKHLPESGLYGLVFCLVLSGSNDKYGIVQFSVNQNTKKIGGKATSLRNLHLVMDHVFLWYLDIRSGAKHISLHSQIEESGAWDNPCDISFQFSLENEEGEWSTKRIRGSGVLPLYHLQESLETNDLHLEPKPELELDSCDIISELESLLCDSYMSSPMCTDSTTISTLLENLDTLLETPLEILSSDNEVKQKFHQILEQLGQFEKQIPAKLHHVICKLRTFTEGVDVRFGSAQKTIQDYNLLLQSRTDISKQLVSVKARECQNKSETSRGKREFERINSEIVELEQKLSGLVEIRDKLKRELEHCDVIDKNLKTEVAQCKSVLLNLKESEVSYKEALTNKKKVEDEWTDLKKNFATNKI 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02113 1289 FunFam Disease resistance protein RPS4 533 727 - -
Vifa2g02113 1289 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 723 IPR044974 GO:0006952
Vifa2g02113 1289 Gene3D - 17 188 IPR035897 -
Vifa2g02113 1289 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Vifa2g02113 1289 Gene3D - 189 350 IPR027417 -
Vifa2g02113 1289 Pfam Leucine Rich Repeat 613 631 IPR011713 -
Vifa2g02113 1289 Pfam NB-ARC domain 207 432 IPR002182 GO:0043531
Vifa2g02113 1289 Coils Coil 1204 1231 - -
Vifa2g02113 1289 PRINTS Disease resistance protein signature 295 309 - -
Vifa2g02113 1289 PRINTS Disease resistance protein signature 386 400 - -
Vifa2g02113 1289 PRINTS Disease resistance protein signature 219 234 - -
Vifa2g02113 1289 PRINTS Disease resistance protein signature 703 719 - -
Vifa2g02113 1289 SMART till_3 19 159 IPR000157 GO:0007165
Vifa2g02113 1289 Coils Coil 1256 1283 - -
Vifa2g02113 1289 Gene3D - 351 435 IPR042197 -
Vifa2g02113 1289 Pfam TIR domain 19 189 IPR000157 GO:0007165
Vifa2g02113 1289 SUPERFAMILY L domain-like 490 881 - -
Vifa2g02113 1289 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Vifa2g02113 1289 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Vifa2g02113 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Vifa2g02113 1289 Gene3D Ribonuclease Inhibitor 727 895 IPR032675 -
Vifa2g02113 1289 Gene3D Ribonuclease Inhibitor 514 726 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02113 Vifa-Chr2 545520754 545535000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02113 18 856 WRKY Transcription Factor Family AT4G12020 31.499 1.11e-107 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02113 - - psat:127083514 2294.62