Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02104 ATGGCACATCGTTTGCTCAGAGATCACGAAGCCGACGGCTGGGAACGTTCCGACTTCCCCATCATCTGCGAATCCTGTCTCGGTGACAGCCCTTATGTTCGAATGACAAGGGCGGAGTATGACAAAGAGTGCAAGATTTGTACAAGGCCTTTTACGGTTTTTAGATGGAGACCTGGTCGAGATGCGAGATATAAGAAAAGTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTATGCCTTTTGGATCTTGAATATGGACTTCCGGTTCAAGTCCGTGATACTGCTCTCAGTATCAGCTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAAGGCTAGAGCTGGTATAGACTATGAATCGTCTTTCGGTAAAGCACGCCCAAATGATACTATCCTGAAGCTTCAAAGAACAACACCTTATTACAAAAGAAACCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGGGGAGCTGAGTGCCCTTACAGACATGAGATGCCAGTAACTGGGGAACTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCGGTGGCTATGAAACTACTTGGCAAGGCAGGAGAGATGAACTCATTGGAGGTTCCTGAGGATGAGAGTATTAAAACACTTTACATTGGTGGACTTGATGCTAGGGTCACCGAGCAGGATTTGCGGGATAACTTTTATGCCCATGGAGAAATTGAGTCTGTCAAAATGGTTCTTCAACGGGCTTGTGCCTTTGTAACCTATACAACAAGAGAAGGCGCAGAAAAGGCAGCAGAAGAACTCTCTAACAAATTGGTTATCAAGGGCCTTAGGCTAAAACTGATGTGGGGCAGGCCTCAGACAGCAAAACTTGAATCTGATGGTTCTGATCAAGCAAGGCAGGCCTCTGTGGCTCATAGTGGTTTGTTGCCTCGAGCTGTTATATCACAACAGCAGAACCAAGACCAGAACCAAGGAATGCTTTACTATAACAATCCACCTCCTCCTCAGCAGGAAAGGAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCATCTCAAGACGGTCCTCCAGGTGGGCCTTCTGGATCAGGGGAGAACAAACCCAGTTCTGAGAAGCAGCAAATGCAACATTATGCCCATCCTATGATGCCACCTCCACATGGCCAATATCATCATCAGTACTATCCTCCATACGGTGGTTACATGCAGCCTGTTCCCCCTTATCAACAATACCCACCACCACCATACAATGCTGCAATGCCTCCATCCCAACCACCTGCTGCTAATCATCCCTATCAACCTCCATCCCAACCACCTGCTGCTAATCATTCGTATCAACCTCCATCCCAACCACCTGCTGCTAATCATTCGTATCAACCTCCATCCCAAGCAGGGTCTTCACAGTCAGGGTCTGGACAAGCTGTGTCTGCACCAGCTGAAACTGGAACATCATCATCGGGCTCACAGCAATAA 1533 0.4664 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMNSLEVPEDESIKTLYIGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKLESDGSDQARQASVAHSGLLPRAVISQQQNQDQNQGMLYYNNPPPPQQERSYYPSMDPQRMGALIPSQDGPPGGPSGSGENKPSSEKQQMQHYAHPMMPPPHGQYHHQYYPPYGGYMQPVPPYQQYPPPPYNAAMPPSQPPAANHPYQPPSQPPAANHSYQPPSQPPAANHSYQPPSQAGSSQSGSGQAVSAPAETGTSSSGSQQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02104 510 MobiDBLite consensus disorder prediction 432 466 - -
Vifa2g02104 510 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Vifa2g02104 510 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Vifa2g02104 510 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Vifa2g02104 510 MobiDBLite consensus disorder prediction 432 510 - -
Vifa2g02104 510 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Vifa2g02104 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Vifa2g02104 510 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Vifa2g02104 510 MobiDBLite consensus disorder prediction 467 510 - -
Vifa2g02104 510 Gene3D - 213 309 IPR012677 -
Vifa2g02104 510 MobiDBLite consensus disorder prediction 340 415 - -
Vifa2g02104 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Vifa2g02104 510 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Vifa2g02104 510 CDD RRM_RBM22 227 300 - -
Vifa2g02104 510 Gene3D - 149 212 - -
Vifa2g02104 510 SMART rrm1_1 229 297 IPR000504 GO:0003723
Vifa2g02104 510 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Vifa2g02104 510 Pfam Torus domain 150 194 IPR032297 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02104 Vifa-Chr2 544804095 544807044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02104 230 450 Eukaryotic Initiation Factors Gene Family AT2G23350 30.252 5.01e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02104 K12872 - gmx:100779917 805.053