Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02083 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTTAGTCTTTTGGTTATTTTTCCATATAGCAAAGCTAGTCAAGTTGATAAACTTAAAGAGATTATTCTTTCCAGAAGCTCACAGAATCCCCCTAAGACTCTTTCTTGGGAAGAAGAAGATGCATTGAAAACACAATCTTCTTCTGCTTCTGCTTATGTTGTGCCTCCTCAAGAAGGGCTAATGCTAGCTGACAAGATTGTTACATTGCCTGGTCAACCCTATGGAGTTAATTTTGATCAATACTCAGGCTATGTCACAGTTGATCATAAAGCTGGAAAAGAACTTTTCTATTATTTTGTGGAGTCTCCCTCTAACTCTTCGACTAAACCTTTAATATTGTGGCTCAATGGAGGACCTGGTTGTTCTTCACTTGGTTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAATCAACTCTGATGGAAAAACTCTATACCGTAACCCTTATGCTTGGAATGAAGTTGCAAATATACTCTTCTTGGAATCTCCAGCAGGAGTAGGCTTTTCATACTCAAACACAACTTCTGACTATGACAATTCAGGAGATAAGACAACTGCAAAGGATGCTTATGTCTTCCTTATCAACTGGCTAGAGAGGTTTCCACAGTACAAAACTAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCATTATGTTCCTCAACTTGCATCCACTATTCTTCAAAACAATAAACTCTATAATCAAATCATTATTAACCTCAAAGGAATTTCTATAGGAAATGCTTGGATTGATGATGCTACAAGTTTAAAAGGGATATTTGATTACCTTTGGACTCATGCTTTGAATTCAGATCAAACTCATGAGTTGATTGACAAGTACTGTGACTTTACTTCTGAAAATGTTTCAGCAATATGTACCAATGCAACAAGAAGAGCTTCAGTTGAGATAGGAAACATAGATTTCTATAACATCTATGCTCCACAATGTCACGATTCTTCTCTCAAAAATGGCTCAACTGGTTATGTAAGCAATGATTTTGACCCTTGTTCTGATTACTATGGTACTTCCTATCTAAATACACCAGAGGTCCAAAAGGCTCTCCATGCAAAACCTACAAATTGGAGCCATTGCAGTCCTGTTATTCGGACATGGAAAGACAGTCCAGTTACAATTCTTCCCACCATCACGTACCTCATCGACAGTGGCATTAAATTATGGATTTACAGTGGTGATACAGATTCAGTGGTTCCAGTTACATCTTCAAGATATTCAATCAACACTCTTAAGCTCCCTATCAACTCGGCTTGGCGTCCATGGTATTCCGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGAAAGAGCTTTGACTTTGATCTCATCATTCGTCTATGGAATCCTGCCTCCTGTTTCACCATCAAATTAA 1488 0.3844 MKKVSLYACLLLNFSLLVIFPYSKASQVDKLKEIILSRSSQNPPKTLSWEEEDALKTQSSSASAYVVPPQEGLMLADKIVTLPGQPYGVNFDQYSGYVTVDHKAGKELFYYFVESPSNSSTKPLILWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNPYAWNEVANILFLESPAGVGFSYSNTTSDYDNSGDKTTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILQNNKLYNQIIINLKGISIGNAWIDDATSLKGIFDYLWTHALNSDQTHELIDKYCDFTSENVSAICTNATRRASVEIGNIDFYNIYAPQCHDSSLKNGSTGYVSNDFDPCSDYYGTSYLNTPEVQKALHAKPTNWSHCSPVIRTWKDSPVTILPTITYLIDSGIKLWIYSGDTDSVVPVTSSRYSINTLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTLISSFVYGILPPVSPSN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02083 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 209 234 IPR001563 GO:0004185|GO:0006508
Vifa2g02083 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 183 IPR001563 GO:0004185|GO:0006508
Vifa2g02083 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 172 IPR001563 GO:0004185|GO:0006508
Vifa2g02083 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Vifa2g02083 495 ProSitePatterns Serine carboxypeptidases, serine active site. 223 230 IPR018202 GO:0004185
Vifa2g02083 495 Gene3D - 350 384 - -
Vifa2g02083 495 FunFam Carboxypeptidase 392 486 - -
Vifa2g02083 495 FunFam Carboxypeptidase 74 332 - -
Vifa2g02083 495 SUPERFAMILY alpha/beta-Hydrolases 78 488 IPR029058 -
Vifa2g02083 495 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Vifa2g02083 495 Gene3D - 392 486 - -
Vifa2g02083 495 Pfam Serine carboxypeptidase 83 484 IPR001563 GO:0004185|GO:0006508
Vifa2g02083 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 79 473 IPR001563 GO:0004185|GO:0006508
Vifa2g02083 495 FunFam Carboxypeptidase 348 487 - -
Vifa2g02083 495 Gene3D alpha/beta hydrolase 74 332 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02083 Vifa-Chr2 538972238 538974291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02083 347 486 Calmodulin-binding Proteins AT2G22960 28.188 4.91e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02083 K16297 - mtr:11443022 874.774