Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02082 ATGGGTGCTTACAAGTACGTTTCTGAGCTATGGCGCAAGAAGCAGTCCGACGTGATGAGATTTATGCAGCGTGTGAGGTGCTGGGAGTACCGTCAGCAATCTTCCATTGTTCGTCTCACCAGGCCTACTCGCCCTGACAAGGCTCGCCGTTTGGGCTACAAGGCCAAACAGGGTTATGTTGTTTACCGAGTTCGTGTCCGTAGAGGTGGAAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTAACCCAATTGAAGTTTCAGAGAAGCAAGAGGTCTCTTGCTGAGGAGCGTGCTGGACGTAAGCTTGGTGGTCTCAGGGTTCTCAATTCCTACTGGGTCAATGAGGATTCCACCTTCAAATATTTTGAGGTCATTTTGGTTGATGTTGCACACACTGCTATTAGAAATGACCCAAGAATCAACTGGCTCGTTAACCCTGTCCACAAGCATAGGGAACTTCGTGGCCTCACTTCTGCAGGGAAAGAAAACAGAGGTTTGAGGGGAAAGGGTCATCGCAACCACAAGAACCGTCCCTCCCGCAGGGCCACCTGGAAGAAGAACAATACTGTTTCTCTCCGTCGATACCGTTGA 615 0.5008 MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSLAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHTAIRNDPRINWLVNPVHKHRELRGLTSAGKENRGLRGKGHRNHKNRPSRRATWKKNNTVSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02082 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vifa2g02082 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vifa2g02082 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Vifa2g02082 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Vifa2g02082 204 MobiDBLite consensus disorder prediction 175 189 - -
Vifa2g02082 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Vifa2g02082 204 FunFam Ribosomal protein L15 1 204 - -
Vifa2g02082 204 MobiDBLite consensus disorder prediction 163 189 - -
Vifa2g02082 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02082 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G17390 90.196 6.12e-127 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02082 K02877 - csav:115716071 377.867