Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02081 ATGGATTCTGCAGATGGAAATGGAAATGGGCTGGAGGAGTCTTTGCCTCCTCCACCTCCTGTTGTCCCCTCAGATGTGGTGCCTCTCAAAGCAGAGGAGGTGCTCTCAGCCCCTCATGAACCTGTTAAGAAAAAAATTACCCGTCTTCCGATAGCAAGACGCGGTCTGGGATCAAAAGGACAGAAGATATCTCTTTTAACTAATCACTTTAATGTTAACATCGGTAAAAATGATGGATATTTTTTTCAGTACAGTGTGGCTTTTTCTTATGAAGATGGACGCCCTGTGGAAGGTAAGGGTGTTGGGAGGAAGATAATGGACCGCGTGCAGGAGACATATGCTTCTGATTTGAATGGCAAGGAATTTGCATACGATGGGGAGAAAAGTCTGTTTACTATCGGCTCTCTTCCTCAAAACAAGCTTGAGTTTGAGGTTGTTTTAGAGGAGGCTAGATCTAACAGAAATAATGGAAATCTTAGTCCTGATGGTAATGGGGACAATGAGAGTGACAAAAAGAGGATCCGACGCCCCTACAATGCCAAGGCATTTAAAGTTGAGATTAGCTTTGCTACCAAAGTTCCTATGTATGCCATTGCCAATGCGTTACGTGGGCAGGAAACTGAGAATTTCCAAGAAGCTGTTAGAGTTCTTGATATCATATTGAGGCAACATGCTGCTAAGCAGGGCTGCCTACTTGTGCGTCAAAACTTTTTTCACAATGATCCCAAGAGTTTTGCTGATGTGGGGGGTGGTGTTCTAGGGTGTAGAGGATTCCATTCAAGTTTTAGAGCTACCCAGAGCGGTCTCTCCCTTAACATAGATGTCACAACCACCATGATAATTCAACCTGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGCGAGAGATCCTTTTAATCTTGACTGGGCAAAGGCTAAAAGGACACTAAAAAATCTGAGGGTCAAAACTCATCCATCCAATCAAGAGGGGAAAATTTGTGGACTCAGTGATGTCCCATGCAAAGAGCTTACCTTTTCTATGAAGAAAAGGGATGGGGATGGTATGGAAGAAATGACTGTTTTGGATTATTTTGTTAATGTCCGTAAGATAGATCTGCGCTACTCTGCTGATCTACCATGCATTAATATTGGCAGGCCTAAACGGCCAACGTATATACCCATTGAGCTGTGTGAATTGGTGTCGTTGCAACGATATACAAAAGCTCTGTCCACACTTCAAAGGGCTTCATTAGTAGAGAAGTCCAGACAGAAGCCACAAGAGAGGATGAGAATTTTATCAGATGCACTTAAAACCAGCAACTATGGGGCTGAACCTTTGCTTCAAAGTTGTGGAATTACTATAAGCACAGGCTTTACTCAAGTGGAAGGACGTGTTTTGCCTGCTCCAAAGTTGAAATTTGGCAATGGTGAAGATTTCAATCCGAGAAATGGGAGGTGGAATTTTAACAATAAGAAATTTGTGCAGCCGACAAAGATAGAGAAATGGGCTGTGGCAAACTTTTCTGCACGATGTGATGTTAAGGGACTTGTAAGGGATCTAATAAGAATTGGAAATACAAAAGGAATTATGATTGACCAACCATTTGATGTGTTTGAAGAAAATCCCCAGTTTAGACGTGCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAGATCATTCAGTCTAAACTTCCCGGGGCTCCTCAATTCCTTCTCTGTTTGCTTCCTGATCGAAAAAACTGTGATATTTATGGTCCATGGAAAAAAAAGAATCTTGCTGATTATGGAATCGTCAATCAGTGCATGTGTCCTGTAAGAGTCAATGATCAGTATCTGGGTAATATTATGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAACTCATTGCTGGGTGTTGAAAGTTCTCCGTCTCTTCCTATTGTTTCCAAATCACCAACTCTCATTCTAGGAATGGATGTGTCACATGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCCGCTGTTGTCAGCTCTAGACAGTGGCCTCTGATTTCCAAATATAGGGCATGTGTTCGCACACAATCTGCAAAAGTTGAAATGATAGATAATTTGTTCAAGAAAGTATCAGATACTGAAGACGAGGGCATCATAAGGGAACTCTTGCTCGATTTCTATAATAGTTCTGGGAAGAGAAAACCAGATAACATTATTATATTTAGGGATGGTGTCAGCGAGTCACAATTCAATCAAGTCTTGAACATCGAACTTGACCAGATCATTGAGGCATGCAAGTTTCTTGATGAAAAATGGAATCCAAAATTTGTGGTAATTGTTGCTCAAAAGAACCACCACACAAGATTCTTCCAGGCCAACGCTCCTGAAAATGTCCCACCAGGTACTGTTATTGACAATAGAATTTGTCACCCCAGAAACTATGATTTCTACCTCTGTGCTCACGCGGGAATGATAGGCACAAGTAGGCCTACTCATTACCATGTGTTGCTTGATGAGATTGGTTTCTCTCCAGACGAACTTCAGGAGCTTGTTCATTCTCTATCATATGTTTACCAGAGGAGCACTACTGCAATTTCAGTTGTTGCACCCATATGCTATGCACACTTGGCTGCAACTCAGTTGGGGCAGTTCATGAAATTTGAGGATAAATCTGAGACAGCCTCAAGCCATGGTGGGCAGAGTGCTGCAGGAGCTGTACCTGTCCCTCAGCTTCCAAAATTGCAGGAAAATGTGTGCAACTCTATGTTCTTCTGTTGA 2739 0.4235 MDSADGNGNGLEESLPPPPPVVPSDVVPLKAEEVLSAPHEPVKKKITRLPIARRGLGSKGQKISLLTNHFNVNIGKNDGYFFQYSVAFSYEDGRPVEGKGVGRKIMDRVQETYASDLNGKEFAYDGEKSLFTIGSLPQNKLEFEVVLEEARSNRNNGNLSPDGNGDNESDKKRIRRPYNAKAFKVEISFATKVPMYAIANALRGQETENFQEAVRVLDIILRQHAAKQGCLLVRQNFFHNDPKSFADVGGGVLGCRGFHSSFRATQSGLSLNIDVTTTMIIQPGPVVDFLISNQNARDPFNLDWAKAKRTLKNLRVKTHPSNQEGKICGLSDVPCKELTFSMKKRDGDGMEEMTVLDYFVNVRKIDLRYSADLPCINIGRPKRPTYIPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMRILSDALKTSNYGAEPLLQSCGITISTGFTQVEGRVLPAPKLKFGNGEDFNPRNGRWNFNNKKFVQPTKIEKWAVANFSARCDVKGLVRDLIRIGNTKGIMIDQPFDVFEENPQFRRAPPMVRVEKMFEIIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADYGIVNQCMCPVRVNDQYLGNIMLKINAKLGGLNSLLGVESSPSLPIVSKSPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDTEDEGIIRELLLDFYNSSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWNPKFVVIVAQKNHHTRFFQANAPENVPPGTVIDNRICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETASSHGGQSAAGAVPVPQLPKLQENVCNSMFFC 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02081 912 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 875 - -
Vifa2g02081 912 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g02081 912 CDD Piwi_ago-like 440 867 IPR045246 -
Vifa2g02081 912 CDD PAZ_argonaute_like 283 395 - -
Vifa2g02081 912 SMART Piwi_a_2 565 873 IPR003165 GO:0003676
Vifa2g02081 912 FunFam Protein argonaute 3 633 912 - -
Vifa2g02081 912 Pfam N-terminal domain of argonaute 61 221 IPR032474 -
Vifa2g02081 912 Pfam Piwi domain 566 873 IPR003165 GO:0003676
Vifa2g02081 912 Pfam Argonaute linker 1 domain 233 281 IPR014811 -
Vifa2g02081 912 SMART DUF1785_2 231 283 IPR014811 -
Vifa2g02081 912 Gene3D paz domain 277 400 - -
Vifa2g02081 912 SUPERFAMILY PAZ domain 278 436 IPR036085 GO:0005515
Vifa2g02081 912 ProSiteProfiles Piwi domain profile. 565 873 IPR003165 GO:0003676
Vifa2g02081 912 Gene3D - 632 912 IPR036397 GO:0003676
Vifa2g02081 912 SUPERFAMILY Ribonuclease H-like 549 871 IPR012337 -
Vifa2g02081 912 FunFam Protein argonaute 7 278 400 - -
Vifa2g02081 912 ProSiteProfiles PAZ domain profile. 326 396 IPR003100 GO:0005515
Vifa2g02081 912 MobiDBLite consensus disorder prediction 152 173 - -
Vifa2g02081 912 Pfam PAZ domain 287 412 IPR003100 GO:0005515
Vifa2g02081 912 Pfam Argonaute linker 2 domain 422 468 IPR032472 -
Vifa2g02081 912 Gene3D - 460 626 - -
Vifa2g02081 912 Pfam Mid domain of argonaute 475 528 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02081 Vifa-Chr2 538444868 538450012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02081 24 912 Eukaryotic Initiation Factors Gene Family AT5G43810 35.167 2.19e-166 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02081 K11593 - gmx:100820376 1591.25