Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02076 ATGGCTATCTCCGGCGATGTTCTCAGAGACTTTTCACCTGAAGTTGTTGGTGAGTTTCACGTCCTTGCTGTTGATGATAGTTTCGTCGATCGTAAGGTTATTGAAAGGTTGCTCAAATTCACTTCTTGCAAAGTGACTGTTGTTGAGAGTGGAACTAGAGCTTTACAGTATCTAGGGTTGGATGGTGACACGAGTTCAATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACTGATTATTCCATGCCTGGGATGACAGGATATGAACTTCTCAAGAAGATTAAGGAATCATCTGTTTTTAGAGAAATTCCAGTGGTGGTTATGTCATCTGAGAACATCTTGACCCGAATCGATAGTTGCTTGGAGGAAGGAGCAGAAGAGTTTCTATTGAAACCGGTCAAGTTGTCCGATGTGAAACGCTTGACAGATTTCATCCTAAGAGGTGAAGGAAAGCAAGTGGGAGGAAAAAGATCTCAAAAAAGAAGCCGATCAGATGATTTCGTTTCATCTCTATCGACCTCATGTTCATCATGCGATCTATCATCACCGTCACCATCTGAAATATCGTCGAAGAAATCTAGACTATAG 591 0.4112 MAISGDVLRDFSPEVVGEFHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTDFILRGEGKQVGGKRSQKRSRSDDFVSSLSTSCSSCDLSSPSPSEISSKKSRL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02076 196 Gene3D - 20 178 - -
Vifa2g02076 196 MobiDBLite consensus disorder prediction 153 196 - -
Vifa2g02076 196 MobiDBLite consensus disorder prediction 166 196 - -
Vifa2g02076 196 Pfam Response regulator receiver domain 21 140 IPR001789 GO:0000160
Vifa2g02076 196 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160
Vifa2g02076 196 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 163 IPR045279 GO:0009736
Vifa2g02076 196 SMART REC_2 19 143 IPR001789 GO:0000160
Vifa2g02076 196 SUPERFAMILY CheY-like 19 148 IPR011006 -
Vifa2g02076 196 CDD REC_typeA_ARR 21 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02076 Vifa-Chr2 538329053 538330902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02076 3 172 Response Regulator Gene Family AT3G48100 65.497 4.51e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g02076 Response_reg 3.6e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02076 K14492 - gmx:100306152 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02076 2 538329053 538330902 Vifa2g02076 2 538329053 538330902 ECH