Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02075 ATGGCTATCTCCGGCGATGTTCTCAGAGACTTTTCACCTGAAGTTGTTGGTGAGTTTCACGTCCTTGCTGTTGATGATAGTTTCGTCGATCGTAAGGTTATTGAAAGGTTGCTCAAATTCACTTCTTGCAAAGTGACTGTTGTTGAGAGTGGAACTAGAGCTTTACAGTATCTAGGGTTGGATGGTGACACGAGTTCAATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACTGATTATTCCATGCCTGGGATGACAGGATATGAACTTCTCAAGAAGATTAAGCAGGAATCATCTGTTTTTAGAGAAATTCCAGTGGTGGTTATGTCATCTGAGAACATCTTGACCCGAATCGATAGTTGCTTGGAGGAAGGAGCAGAAGAGTTTCTATTGAAACCGGTCAAGTTGTCCGATGTGAAACGCTTGACAGATTTCATCCTAAGAGGTGAAGGAAAGCAAGTGGGAGGAAAAAGATCTCAAAAAAGAAGCCGATCAGATGATTTCGTTTCATCTCTATCGACCTCATGTTCATCATGCGATCTATCATCACCGTCACCATCTGAAATATCGTCGAAGAAATCTAGACTATAG 594 0.4125 MAISGDVLRDFSPEVVGEFHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTDFILRGEGKQVGGKRSQKRSRSDDFVSSLSTSCSSCDLSSPSPSEISSKKSRL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02075 197 Gene3D - 20 179 - -
Vifa2g02075 197 SMART REC_2 19 144 IPR001789 GO:0000160
Vifa2g02075 197 SUPERFAMILY CheY-like 19 149 IPR011006 -
Vifa2g02075 197 MobiDBLite consensus disorder prediction 154 197 - -
Vifa2g02075 197 Pfam Response regulator receiver domain 21 141 IPR001789 GO:0000160
Vifa2g02075 197 CDD REC_typeA_ARR 21 143 - -
Vifa2g02075 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 164 IPR045279 GO:0009736
Vifa2g02075 197 MobiDBLite consensus disorder prediction 167 197 - -
Vifa2g02075 197 ProSiteProfiles Response regulatory domain profile. 20 148 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02075 Vifa-Chr2 538329053 538330902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02075 3 173 Response Regulator Gene Family AT3G48100 65.116 2.59e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa2g02075 Response_reg 2.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02075 K14492 - gmx:100306152 247.669