Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02070 ATGGCAATCACAGTATCAAGTAGACAATTATTCATAGATGGAGAGTGGAGAACTCCTATCCTCAACAACAGGATTCCAATCATCAATCCTTCCAATGAAAACATCATAGGAGATATACCTGCTGCTACTAAGGAAGATGTTGATCTTGCTGTGGATGCTGCTAAAAGAGCCATTTCCAGAAACAACGGTAGAGATTGGTCTACTGCTTCTGGCTCTCGTCGTGCTTGCTATCTTCGAGCCATTGCTGCAAAGATAAAAGAGAAAAAGAATGAACTAGGGAAGCTAGAATCAATTGACAGTGGAAAGCCGCTGGATGAAGCACTAGCGGATTTGGATGATGTTGTTGCTTGTTTTGAGTACTATGCTGTGCTTGCGGAAGGCCATATTCTCAAGGAACCTATTGGTGTTGTTGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCAACTTGGAAAATTGCTCCGGCTTTGGCTGCTGGTTGTGCTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACCTGTTTGGAGTTAGGCGAAATATGCCAAGAAATTGGCCTTCCTCCTGGTGTTTTAAATATTGTCACTGGATTAGGCCATGAAGCAGGTGCTTCTTTGGCATCTCATCCTGATGTAGATAAGATTTCTTTTACTGGTAGTTCAATAACTGGAAGCAAGATTATGACAACTGCAGCACAGCTAGTCAAGCCTGTTTCACTAGAGCTTGGTGGAAAGAGCCCGATCGTTGTTTTTGAAGATATTGACCGTGATAAGGTTGCTGAATGGACCGTCTTTGGCTGCTTCTTTACTAATGGCCAGATATGCAGCGCAACATCTCGGCTTATTGTGCATGAAAGTATAGCTGTGGAGTTTGTTAATAAACTTGTCAAATGGGCCGAAAACATCAAAATTTCGGATCCGTTGGAAGAAGGTTGCAGGCTTGGACCTATTGTCAGTGAAGCACAGTATAAGAAAGTATTGAATATGATCTCAATGGCTAAGAGTGAGGGTGCAACGATTTTGACTGGTGGCCGTCGACCCGAGCATTTAAAGAAGGGATATTTTGTTGAACCAACCATCATAACCAATGTGACTACCTCGATGCAAATTTGGAGAGAAGAAGTATTTGGACCTGTACTCGCGGTGAAAACATTTAGCACTGAGGAAGAAGCTATTGATCTAGCAAATGACACTTGTGAGTTTGATGAACTGATATTAATTTCACTTCTACAACCAATTTTTTCTTCACTTGTGGATTGA 1263 0.4181 MAITVSSRQLFIDGEWRTPILNNRIPIINPSNENIIGDIPAATKEDVDLAVDAAKRAISRNNGRDWSTASGSRRACYLRAIAAKIKEKKNELGKLESIDSGKPLDEALADLDDVVACFEYYAVLAEGHILKEPIGVVALITPWNYPLLMATWKIAPALAAGCAAILKPSELASVTCLELGEICQEIGLPPGVLNIVTGLGHEAGASLASHPDVDKISFTGSSITGSKIMTTAAQLVKPVSLELGGKSPIVVFEDIDRDKVAEWTVFGCFFTNGQICSATSRLIVHESIAVEFVNKLVKWAENIKISDPLEEGCRLGPIVSEAQYKKVLNMISMAKSEGATILTGGRRPEHLKKGYFVEPTIITNVTTSMQIWREEVFGPVLAVKTFSTEEEAIDLANDTCEFDELILISLLQPIFSSLVD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02070 420 SUPERFAMILY ALDH-like 6 399 IPR016161 GO:0016491
Vifa2g02070 420 Pfam Aldehyde dehydrogenase family 23 399 IPR015590 GO:0016491
Vifa2g02070 420 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 269 280 IPR016160 GO:0016491
Vifa2g02070 420 PANTHER ALDEHYDE DEHYDROGENASE 5 399 - -
Vifa2g02070 420 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 249 399 IPR016163 GO:0016620
Vifa2g02070 420 Coils Coil 78 98 - -
Vifa2g02070 420 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 248 IPR016162 GO:0016491
Vifa2g02070 420 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 255 - -
Vifa2g02070 420 FunFam Betaine aldehyde dehydrogenase 245 402 - -
Vifa2g02070 420 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 241 248 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02070 Vifa-Chr2 537986758 537989612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02070 1 399 Aldehyde Dehydrogenase Gene Family AT1G74920 70.024 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02070 K00130 - gmx:100170755 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02070 2 537986758 537989612 Vifa2g02070 2 537986758 537989612 ECH
Vifa2g02070 2 537986758 537989612 Vifa2g02070 2 537986758 537989612 PCT