Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02069 ATGGATGCTCTATCATCTTCTGCATTGTCACTCTTTCAAGACTTCATTCCACTACTCATAGCAATACTAGTTCTTCTTGTTGCCACCATCTTCTTCTTAATAATCTGTTACCAATGGCTCAAATACCGAACGGTCTTCCTTCCCTCTTCCTCCGGCGATGTCAGTGATTTAGCGCAACCAACAACGGCGTTCCGCCGCCACACACATGGTTTAGGCGAGTCAGTTATAAACACAATTCCATCGTTAATCTACTGTACTAACAGTGAGCAAAAAGAATCTCCACGTGATTGTGCTGTTTGCTTGGTTGAATTTAAACAAGAGGATCGCGTTCGTACTCTTCCTCTTTGTTCTCATACGTTCCATATCCATTGTATTGATACCTGGCTTCGTTCACACCCTAACTGTCCTCTTTGTCGCTCATGTCTTAGCTGTGGTATGTCAGAGTCGTCTTTCAGACCTCTCATGTCCGACAGAATCCGCCCCTCTGTTGTTACATCGGTGACGGAGATCACCCTCCTCACTTTACCGACACGAGGATCAGTTTAA 546 0.4487 MDALSSSALSLFQDFIPLLIAILVLLVATIFFLIICYQWLKYRTVFLPSSSGDVSDLAQPTTAFRRHTHGLGESVINTIPSLIYCTNSEQKESPRDCAVCLVEFKQEDRVRTLPLCSHTFHIHCIDTWLRSHPNCPLCRSCLSCGMSESSFRPLMSDRIRPSVVTSVTEITLLTLPTRGSV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02069 181 Pfam Ring finger domain 96 139 IPR001841 -
Vifa2g02069 181 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Vifa2g02069 181 SMART ring_2 97 138 IPR001841 -
Vifa2g02069 181 PANTHER RING-H2 FINGER PROTEIN ATL16 19 147 IPR044600 GO:0016567|GO:0016740
Vifa2g02069 181 SUPERFAMILY RING/U-box 86 144 - -
Vifa2g02069 181 FunFam E3 ubiquitin-protein ligase ATL6 59 144 - -
Vifa2g02069 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02069 Vifa-Chr2 537948765 537949310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02069 69 163 C3H Transcription Factor Family AT3G18930 54.630 3.24e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02069 - K19041 psat:127080038 191.815