Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02068 ATGAATGCTATATTGTCACTCCTCAAAGAAATATTCAATCCTGACAAATATGAACGCTTTATCATAGTAATGGAAGTTCTTATTCTTATCGCCGCCTTCTTCGCATTAATCTGTTACCATCGGCTCAAATACGGAACGTTCTTCCCTCTCCCTCAGTCTTCCTCCGGCGATGTAAGGGATTTACAGTTACAGCCAACAACGGTGGAGTTCCACCGCTACCACCACAGTCACACACAGGGTTTAAACGAGTCAGTTATAAACATAATTCCATCATTCATCTACTCTACTAACAATGAACAAAAAGAAGAATCTCCACGTGATTGTGCGGTTTGTTTGGTTGAGTTTAAAGACGATGATTATGTTCGCAAACTTCCTCTTTGTTCCCACACGTTCCATCTTCATTGTGTTGATACTTGGCTTCGCTCACACCCTAACTGTCCTCTTTGTCGCTCATGTCTTCGCTGTGAATTTTCTGAGTTGCCTTTCAGACCTCTCATGTCCGAGAGAATCCGCCCCTCATCGGTGATGCAGATCGCCCTCGCCAGTCTCCCCACACGAGGATCGGTTTAG 570 0.4439 MNAILSLLKEIFNPDKYERFIIVMEVLILIAAFFALICYHRLKYGTFFPLPQSSSGDVRDLQLQPTTVEFHRYHHSHTQGLNESVINIIPSFIYSTNNEQKEESPRDCAVCLVEFKDDDYVRKLPLCSHTFHLHCVDTWLRSHPNCPLCRSCLRCEFSELPFRPLMSERIRPSSVMQIALASLPTRGSV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02068 189 SUPERFAMILY RING/U-box 91 160 - -
Vifa2g02068 189 FunFam E3 ubiquitin-protein ligase ATL6 69 156 - -
Vifa2g02068 189 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vifa2g02068 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 155 IPR013083 -
Vifa2g02068 189 SMART ring_2 108 149 IPR001841 -
Vifa2g02068 189 CDD RING-H2_EL5-like 107 150 - -
Vifa2g02068 189 PANTHER RING-H2 FINGER PROTEIN ATL16 21 169 IPR044600 GO:0016567|GO:0016740
Vifa2g02068 189 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02068 Vifa-Chr2 537532939 537533508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02068 70 173 C3H Transcription Factor Family AT3G18930 49.153 2.30e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02068 - K19041 psat:127080038 189.119