Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02064 ATGGCTAGAGGGAAGGTGAAACTTGCATACATAATGAATAACTCAACTAGGAGAGCAACATTCAGAAAAAAGAAAAGTGGTATTCTAAAAAAGATCGAAGAACTCAGCATCCTTTGCGGGGTAGATGCATGCGCAATCATCTATGGAGAAAACTCTCCTCAAGCAGAGGTTTGGCCATCTAGGATTGGAGTAAGAAGTGTATTGTACCGGTTCATGAGATTGCCTGAACTTGAACGAAGGAGAAAAATGATAGATTTGGAAGACTTCTTGTCAGAGAGCATTATGAAAGTCCAAGATCAGTTGAGAAAACAAATCGAGGAAAACCAACAGAAGGAAATGACTTACCTTATTAGTAAATTTATGCATATAGGTGAATATAGCATGGAAAATATGAGCTTGACTAAGGTAACTAACCTGAAAGCTTTTATTGACAATAGTTTGAAGGAAGTTGAGCAGAGATTGAATTCAATGGATGTCCATGACCAAGAGGAGGTTGCAAATGGTGCTAGAGCCGTTAAAGAAGAAGATATGTTGGCTAATATGGATCGTTCTACTACCCAAGGTTTTGAGATGAACATTAATTATGGTATGCATAATGATGATCGATTTTCTATCAACTTTTCTCAGCTACCATTTGACAATGTTAATTTCAACCCAAATGGATTTTGA 669 0.3707 MARGKVKLAYIMNNSTRRATFRKKKSGILKKIEELSILCGVDACAIIYGENSPQAEVWPSRIGVRSVLYRFMRLPELERRRKMIDLEDFLSESIMKVQDQLRKQIEENQQKEMTYLISKFMHIGEYSMENMSLTKVTNLKAFIDNSLKEVEQRLNSMDVHDQEEVANGARAVKEEDMLANMDRSTTQGFEMNINYGMHNDDRFSINFSQLPFDNVNFNPNGF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02064 222 PANTHER MADS BOX PROTEIN 3 155 - -
Vifa2g02064 222 Gene3D - 13 169 IPR036879 GO:0003677|GO:0046983
Vifa2g02064 222 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Vifa2g02064 222 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Vifa2g02064 222 Coils Coil 94 114 - -
Vifa2g02064 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa2g02064 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa2g02064 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa2g02064 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa2g02064 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa2g02064 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vifa2g02064 222 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02064 Vifa-Chr2 536267022 536269467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02064 1 154 Type I MADS-box Gene Family AT5G48670 43.506 3.93e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g02064 SRF-TF 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02064 - - cam:101511888 244.202