Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02059 ATGTTGAAATCCCTCAAACGTGGCGAATCGTCTCTTAAAGTGGATGTTTCTTCATCTCCGTCTTCGTGGTCTGCCAAGTCCTTCACTAAGGACGGTCGAATAATTAGTGTTGGTGACTGTGCTCTCTTCAAACCATCAAAAGATCGCCCACCTTTTATTGGAGTAATTCGTAGTTTGACACTTGGTAAAGAAAGTAAATTAAAGTTAAGTGTTAATTGGCTTTATCGGTCCATTGAAGTAAAACTCAGCAAAGCAGAGCCCTTGGAGGCTGCTCCCAACGAGATTTTCTACTCCCTTCATAAGAGTGAGATTGATGCTGAATTGCTAATCCATCCTTGTAAAGTTGCATTCCTTCCTAAAGGCGTCAAACTTCCTGAAGGGATTTCATCATTTGTGTGTAGAAGGGTTTATGACACATCGAACAAGTGTTTAAGATGGCTAGATGATCAAGAGTATCTTAACGAATGCCAAGTACATAAGTTGGTATATAAGACTTGTGTAGAAATGAATGCAACAATTCAAGCAGGCGGTCGATCTCCTAAGCCAATGAGTAGCCCAACATCAACATCACAGGTGAAATCAGTTTCAGATAGTGTGCAGAACAGTACTTCATCCTTTCCTTCTCATGTTAAGGGGAGGAAAAGGGATAGGGTAGAGCAGGGTTCTGAGCCCATCAAGCGAGAGCGTTCAATAAAAATTGAGGATGGACATTCTAGTAATTTTAGGCATGATAACAGTTTGAAGGCAGAGATATCCAAAATTACAGAAAAGGGAGGGCTTGTTGATGCTGAAGGAGTTGAAAAGTTTGTGCAGCTGATGCTTCGTGATAGAAATGAAAAGAAGATAGATTTAGCTAGCCGGTCATTGCTTGCAGCCGTTATTGCAGCAACAGATAGATTGGATTGTCTTAGTCAGTTTGTGCAGCAGAGGGGTTTACCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGAAAGAACAGTGATGGTGCTGTGTCTAGGGATGGTGATAAATCCGTTGAGGAATTTCTCTCAGTATTACTTCGGGCACTTGATAAGGTCCCGGTCAATCTACAGGCTCTAAAAATGTGCAACATCGGTAAATCTGTGAATCATTTGCGAACCCATAAAAACTTTGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGACACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAAGGATGGAAAGTCTGGTTCTGGTCCCAGTTCCCCGTGTCCTGCCAAATCACGGGTTGCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGCGTGTCATCTGATGTTGCCATGAAGAGTTCAGTTACACAGATTTCTACATCTAAAACTTCTTCCTTGAAGATTGTCCAGGGTGAGAACACACCTAAATCTGCATCAACATCTGCATTTCCAGGACATGCTAAATCAGTGCCTTCGCCTGTATCTGCAATTACGAACTTAAAAGATGGACAGCCCCATGTTGCCGCTGTCAATGGCAGTTCTGATATTCCTATTGCCAATGCAAAGGATGAGAAAAGTAGTAGTTCTAGTCAATCTCACAACAGTCAATCTTACAATAACAGTCAATCTTGTTCTAGTGACCATGCTAGAACTGGGGGTCTTTCAGGGAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGCAAACAAGTTATCAGGTGGCTTTTCACGGAATCGGAAATCTATCAATGGACTCCTAGGTTCAACTTCATCCAAAGGGAAAAGGGAAAGTCGGTCAAGTAGGAAGTCCTCCTTGCACAAAAGTTTAACTTCAGAGAGAAAATCTCAATCTGGGTTAATTGAAAAAGCACTTGATAAAATTTCTCATGAAGGGAATACTCCCAAGCTAGTTGTTAAAATTCCAAACCAAGGTAGAAGTCCTGCTCAAAGGGCCAGTGCTGGTTCTTTTGATGAACCTACAATCATGAATAGTAGAGTCGCTTCTCCTGTTCTCTCAGAGAAGCATGATCAGTTTGACCATGGTTTAAAGGAAAAGAGTGACTTTTATCGAGTCAATATTGGCTCTGATGTTAACTCTGAATCTTGGCAGAGTAATGATTTTAAAGATGTATTGACTGGCTCTGATGAAGGCGATGGATCCCCTGCTGCAGTTACTGATGAAGAGCACTGTAGGACTGGCAATGATTGTAAGAAAACAGATGAGGTATCAAAAATTGCTTCCTTGTCATCTGGAAACGGAAACAAAGCTAGGAATTTGCAGGATGCTTCTTACAGTTCCATAAATGCTTTAGTTGAAGGTGTTAAGTACTCTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATGTTGAAATCTGAATTATCGACTCCAACTGGGTCTCCAGAACGAAAAGCTACTGCTGTTGAACAGTTGTGCACAAGCAACGCTGCAGTTAAGCCCTCTGAAGAAAATATTGTGCGGGATGAATGCCACTCAAATAATAGTCTTGATGCTGAAGATAAAAAACATGGTTCTATATCTGGTGAGATGAATGATGATAATGATTTTGATTGTCCGGCATCTGGAGGAAAGGCTATTGGTGAGCTAGATAAACCTGTTAATGCACTTAGTAAGGATTTGCAGCATGTTACAGAAACTATTCAAACTGGATTAGAAAGGAAGGGGATATCAATTGAAAAGTCTGTTCCTGCTTCATTGCGCGCACTTCCTGGATTGCAAGAGGCTAGGGATTTTAACTGTAGTAAGCAGCTCCGAGAAGAGGTTGTGAGAGGAGTGAATGCTGGTGAAACTCTTGGTATTAAGGTAAGTGGCGTTGCTGGAGTTGAGGTGGAAGCAATTGACAAATCGTTTCACACATCTGTGGAAGTGGATGTAAATGGTGATCACAGTGCTGAACGATCAGGCGCCGACAGACTGACGACTCAAAATTCTCCCACTGTTCACAGACAATCTGATTCAGCTAAAGGAACAGATGATGATGTACTCCTTTCTCGTGGTGTTGATAAGGTTCCTGAAGACTTCAATGAACGGGAGCACGGAAAAAACAGCGATATTGCTGCCGGCAACCATGCTAATGAGGCTAAAATGCTAAGAACTGAGCGTGGACATGTTGTCTTGGCTATGCCTGCGAAAAGTGGTTTGTGTTCTAGTGCAACTGATTTTTCTGCTGAACGTGTGGAGGAAAATTCAGATATAAAAGAGGTTCATGACCAAGATGCTGGACAGAGGCTTCACAAAGCATCATCTAGCTATCTTTCACAAGAAATGGATAAGCAACTGGATTCTAAAGGATCAAAACCGAATGCCATTGAAGCAGAAGAGGCTGAGGAGTGCACCTCTACCACGGCGGATGCTTCTTCCATGTCTGCTGCTGCTGTGTCAGATGCAGATGCAAAGGTTGAATTTGACTTAAATGAGGGGTTCGGTGCCGATGATGGAAAGCGTGGTGAGTTAAACAGCATTGCCACATCTGGGTGTGCTCCTTCTGTTCGATTTATTAGTCCTGTACCATTTTCTGCTTCATCTTTGTCTTACGGTATTCCTGCATCAATCACCGTGGCTGCTGCTGCAAAAGGCCCCTTCATGCTGCCTGAGAATTTATTGAGAAGTAAAGCGGAACTTGGTTGGAAGGGGTCAGCTGCTACTAGTGCATTCCGGCCAGCCGAGCCCAGGAAAGTTATGGAAACATCGCTTGTTACACTAACCACCCCTAATCCTGATACTGCCGCTGGAAAGCAGAGTCGACTACCATTAGATATTGACTTGAATGTGGCCGATGAAAGAATACTAGATGATATTTCTTCTCCATCTTGCGCTCGTTACATGAATATTGCATCTCTTGAAGCCAATGGTTACAATCCAGTATGCAGTAAGATGGCCTCACCTGTTCGGTGCTCTGGTGGTCTTGGACTTGACTTAAACCTAATGGATGAAGCTTCTGACATCGGTAATTGCTCTGCAAGCAGTAGTTATAAGATAGATGTACCTCACATGCAGGTGAAATCATCATTGGGTGGCCGTTCAAATAGAGAAGCGAGTGCCCACAGGGACTTTGATTTGAATAATGGACCTTCAGTTGAGGAAATCACCATTGGACCGTCACTGCTCTCTCAGCATGCCAGGAGCAGTGTGCTAACGCAACCATCTGTTTCTGGACTTAGGATGAGTACTGCCGAGCTAGGTAACTTTTCTTCATGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACGATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCCCCTAATGGATCACAAAGATTATTGAGTCCTGCCACTAGTGGCAACCCATTCGGAACTGATATTTATAGGGGGCCAGTATTGTCATCTTCTCGTGCAATGCCATATCCATCTGCTCCATTCGAATACCCTGTTTTCCCTTTTAATTCCAGCTTTCCTCTTCCATCATCGTCATTTTCTGCTGGATCGACTACCTTTGTGTATCCAACATCAGGAAGTCGACCTTGCTTCCCTGTGGTAAATTCACAGTTGATGGGGCCTGCCAGCACAGTTTCATCTCATTATCCCAGGCCTTATGGTGTTGGCCTTCCAGAAGGTAGCAGTAGTACTAGTGTTGAGACCAGTAGGAAATGGACAAGACAGGGCTTAGATCTTAATGCTGGACCTGGAGGTTTAGACATAGAGGGGAGAGATGAAATCTCACCTCTGGCATCAAGGCAACTCTCTGTTGCTAGTTTGCAGGTCCTAGCCGATGAGCATGCAAGGATCCATCTGGCTGGTAGTGTCCTTAAGAGGAAGGAGCCTGATGGTGGGTGGGATGGCCACACCAAAAATTCCTCATGGCAATAG 4857 0.4355 MLKSLKRGESSLKVDVSSSPSSWSAKSFTKDGRIISVGDCALFKPSKDRPPFIGVIRSLTLGKESKLKLSVNWLYRSIEVKLSKAEPLEAAPNEIFYSLHKSEIDAELLIHPCKVAFLPKGVKLPEGISSFVCRRVYDTSNKCLRWLDDQEYLNECQVHKLVYKTCVEMNATIQAGGRSPKPMSSPTSTSQVKSVSDSVQNSTSSFPSHVKGRKRDRVEQGSEPIKRERSIKIEDGHSSNFRHDNSLKAEISKITEKGGLVDAEGVEKFVQLMLRDRNEKKIDLASRSLLAAVIAATDRLDCLSQFVQQRGLPVFDEWLQEVHKGKNSDGAVSRDGDKSVEEFLSVLLRALDKVPVNLQALKMCNIGKSVNHLRTHKNFEIQRKARGLVDTWKKRVEAEMNIKDGKSGSGPSSPCPAKSRVADVGQGGNRHSGVSSDVAMKSSVTQISTSKTSSLKIVQGENTPKSASTSAFPGHAKSVPSPVSAITNLKDGQPHVAAVNGSSDIPIANAKDEKSSSSSQSHNSQSYNNSQSCSSDHARTGGLSGKEDARSSTAMSANKLSGGFSRNRKSINGLLGSTSSKGKRESRSSRKSSLHKSLTSERKSQSGLIEKALDKISHEGNTPKLVVKIPNQGRSPAQRASAGSFDEPTIMNSRVASPVLSEKHDQFDHGLKEKSDFYRVNIGSDVNSESWQSNDFKDVLTGSDEGDGSPAAVTDEEHCRTGNDCKKTDEVSKIASLSSGNGNKARNLQDASYSSINALVEGVKYSEADDVGMNLLASVAAGEMLKSELSTPTGSPERKATAVEQLCTSNAAVKPSEENIVRDECHSNNSLDAEDKKHGSISGEMNDDNDFDCPASGGKAIGELDKPVNALSKDLQHVTETIQTGLERKGISIEKSVPASLRALPGLQEARDFNCSKQLREEVVRGVNAGETLGIKVSGVAGVEVEAIDKSFHTSVEVDVNGDHSAERSGADRLTTQNSPTVHRQSDSAKGTDDDVLLSRGVDKVPEDFNEREHGKNSDIAAGNHANEAKMLRTERGHVVLAMPAKSGLCSSATDFSAERVEENSDIKEVHDQDAGQRLHKASSSYLSQEMDKQLDSKGSKPNAIEAEEAEECTSTTADASSMSAAAVSDADAKVEFDLNEGFGADDGKRGELNSIATSGCAPSVRFISPVPFSASSLSYGIPASITVAAAAKGPFMLPENLLRSKAELGWKGSAATSAFRPAEPRKVMETSLVTLTTPNPDTAAGKQSRLPLDIDLNVADERILDDISSPSCARYMNIASLEANGYNPVCSKMASPVRCSGGLGLDLNLMDEASDIGNCSASSSYKIDVPHMQVKSSLGGRSNREASAHRDFDLNNGPSVEEITIGPSLLSQHARSSVLTQPSVSGLRMSTAELGNFSSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGSQRLLSPATSGNPFGTDIYRGPVLSSSRAMPYPSAPFEYPVFPFNSSFPLPSSSFSAGSTTFVYPTSGSRPCFPVVNSQLMGPASTVSSHYPRPYGVGLPEGSSSTSVETSRKWTRQGLDLNAGPGGLDIEGRDEISPLASRQLSVASLQVLADEHARIHLAGSVLKRKEPDGGWDGHTKNSSWQ 1618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 702 724 - -
Vifa2g02059 1618 ProSiteProfiles BAH domain profile. 33 148 IPR001025 GO:0003682
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 1079 1093 - -
Vifa2g02059 1618 Gene3D - 21 257 IPR043151 -
Vifa2g02059 1618 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 10 1618 - -
Vifa2g02059 1618 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 264 400 IPR035441 -
Vifa2g02059 1618 ProSiteProfiles TFIIS N-terminal domain profile. 320 399 IPR017923 -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 11 26 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 509 539 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 987 1019 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 429 488 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 546 582 - -
Vifa2g02059 1618 Pfam BAH domain 35 144 IPR001025 GO:0003682
Vifa2g02059 1618 SMART TFS2_5 319 398 IPR003617 GO:0005634
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 400 607 - -
Vifa2g02059 1618 Pfam TFIIS helical bundle-like domain 347 396 IPR017923 -
Vifa2g02059 1618 CDD TFIIS_I 334 397 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 1060 1121 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 971 986 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 961 1024 - -
Vifa2g02059 1618 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 301 411 IPR035441 -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 175 239 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 177 208 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 1 26 - -
Vifa2g02059 1618 SMART BAH_4 33 148 IPR001025 GO:0003682
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 1060 1078 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 583 598 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 1094 1108 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 623 648 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 1338 1360 - -
Vifa2g02059 1618 MobiDBLite consensus disorder prediction 209 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02059 Vifa-Chr2 534731074 534737993 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vifa2g02059 BAH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02059 - - ccaj:109810746 2156.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02059 2 534731074 534737993 Vifa2g02059 2 534731074 534737993 ECH