Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02057 ATGCCTCTTATGATGGCTGACAATAAACTTTCTCCCTCGTCTCTCTCTCCAAACTTCAAAAATGAGTATTTAGAGAACATAGTCTCTCGTCCCACTCCCACCACCACCAACAATGACAACGATGATACATTGTTGATGCCACCACCATCATATGCACAAACCTTCTCTAATGGGTATATGGATCTCTCTCAAAATCCAAAGGAGGAAATTACCAAAAAACGTAAGGGTAGACCCCAAGGCTCTAGAAATAAACCTAAATCACGCATCATTATTGAGGAAAACACAGAAGCCCTGGCAGAAGTAGTTACAATTAAGATCTGTGTTGGAGAAGATATTGTGGAGACTCTAGTTAACTATGCTATACGTCGGCAAGTTGACATAGTAGTGTCGAGGGGTTTCGGTCTTGTATGTAATGTTACTCTTCTTGATCCGGTATCTTGTGTCCCGTTATTACCCATCGAAGGACCATTACATATGACATCTTTATTTGGAACATATGTAAATCCTAATTGTGAATGCGTTCCTTCACAATTCATAGCTAATCCACCATGTTCCTCTTTTACCATATTTTTCTCTGGTATTAATGGGCATGTGTTTGGCGGAGTTGTTGGTGGAAAAGTTATTGCTGCTGGGATTATTTTTATCAATGCCACTCTTGTCAAGAAAACTACATTCCATAGAGCGGTTTCTATCAAGAGAAATGATCGACAAAATGAAGAGGGTGGATCAATACATGAAGATGGTGCCATCAATAATGATGACCATCTAGCACATGAATCTCACAACAACAACAATATTGTTTTTCACATGTCAACAACCTTCAATAACGTGGGTGATATTTCAACTCAACTGAATCATCAAATGTCCCATAACTATCTTCCTACGGATGAGAGTGCCATGTCGTGGAACCACTCCACTCACTAA 924 0.3961 MPLMMADNKLSPSSLSPNFKNEYLENIVSRPTPTTTNNDNDDTLLMPPPSYAQTFSNGYMDLSQNPKEEITKKRKGRPQGSRNKPKSRIIIEENTEALAEVVTIKICVGEDIVETLVNYAIRRQVDIVVSRGFGLVCNVTLLDPVSCVPLLPIEGPLHMTSLFGTYVNPNCECVPSQFIANPPCSSFTIFFSGINGHVFGGVVGGKVIAAGIIFINATLVKKTTFHRAVSIKRNDRQNEEGGSIHEDGAINNDDHLAHESHNNNNIVFHMSTTFNNVGDISTQLNHQMSHNYLPTDESAMSWNHSTH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02057 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 259 IPR014476 GO:0003680
Vifa2g02057 307 MobiDBLite consensus disorder prediction 27 64 - -
Vifa2g02057 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 228 - -
Vifa2g02057 307 Gene3D - 99 240 - -
Vifa2g02057 307 MobiDBLite consensus disorder prediction 234 254 - -
Vifa2g02057 307 ProSiteProfiles PPC domain profile profile. 95 245 IPR005175 -
Vifa2g02057 307 MobiDBLite consensus disorder prediction 27 88 - -
Vifa2g02057 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 215 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02057 Vifa-Chr2 534066511 534067434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02057 69 248 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 27.322 1.31e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02057 - - psat:127131778 264.618