Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02056 ATGAGCCTAAACCTCATTTGGTTCTGGACATTACTCACCTTTCTGTTTCTGTTTTTGCTAATGACCAATTCCCAATCAGAAAATGTCCGAAAAGTCCTTGTCACCTTCATGCATAAACTTGAACCACCTCATCAGAATTCCATATCGGGTTGGAACCTCACATCAGATCCTTGCACGCATAACTGGCAAGGAGTAACTTGCTACACAAGCAACCAATACATTAAAAGCATAGTTCTTGATAATCTCAACTTCACCGGTGTTCTAGACGCGACTTCTCTTTGCATTGCCAACAATCTTCAATTCCTCAGCCTCAACAACAATTACTTACATGGTTTTATATCCAAGGATATAAAAAACTGCAAGTCCTTGACACACTTGCTTCTTAGTGGTAACGAATTCTCTGGCAATCTTCCTCTTTCCATTCCTCAACTACGGAACCTCAAGCGCCTTCATGTGTCCAACAATCACTTCACTGGAAACCTTCCGAATATGGTTAATGTTACAAGCTTGATATCCTTTCTAGCTCAAAACAACAACTTCACTGGTCAGATTCCAGATTTTGATTTCTCAAACTTTGAAGCTTTTAATGTCTCTAACAACAATTTGCGCGGTCCTGTTCCTGATGTTGAAGGTTTTTTTAGTGCAGATAGTTTTTATGGTAATCCTAATTTATGTGGAAAACCAATTTCAAACTCTTCATGTCCATCACCACCTCCTCGGCCTCCTCCTCCAGTTGTTAAGAAAGACAAAAGTAAAAATGCATTTATCGATGATTTGCTAATCTATTCAGGTTACATAGTTCTTGGTTTAATTTTCATTATTTTCTTGATCTTCAAGTTGGTAAAAAAATTAAAAACCAAAGATAAAGAAAAAGTGTTAAATCATGGTGAAAAGAAGGACATGTCACAAGACATTAGTTTTGTTGGTGGTGGTGAAAAGCTTAGTGAGATACTGAATTCCAATGGATCAAAGAGTTGGTTCAATGGCCTTGGGATAAAATCGGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACTTCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAGTTTGAGGATTTGTTAAGTGCTCCTGCTGAATTGATTAGGCGAGGAAAACACGGAAGCCTCTACAAGGTTATGCTAGATTATGGAGTGCTTTTGGCTGTTAAGAGGATCAAGGATTGGGGAATTTCGAAGCATGATTTTGAGAGAAGGATGAACTTGATAGCTCAAGTGAAGCATCCTCTTGTTATGTCACCGGTGGCGTACTATTGCTCTCAGCAAGAGAAGCTTCTGGCTTATGAATATCTTCCTAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGTGGACACTCTCTTGACTGGAGGAGCAGACTAGGTGTTGCTGTAAAGATAGCTGAAGCTATGGCCTATATGCATGAGGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTAAAATCAAGTAACATTCTGTTTGACAAGAAAATGAATCCGCAAATAAGTGAATATGGTCTAATGGTGGCGGAAAACCGAGGAGTGATTTCTCATAGAAAAAGCCTCGGAAACAGAAATATGTCTGCAGCAGCCACCTTCAGAGGTGATATATATGCATATGGTGTCATACTTCTCGAACTCCTGACGGGGAAGGTAGTTAAAAATGATGGATTTGATCTGGTTAAATGGGTGAATTCGGTGATCAGTGAGGAATGGACGGCAGAAGTTTTTGACAGGTGCTTAAACTCACAAGGTGCTTCAGAAGAGAGGATGGTGAACTTGTTGCAGGTGGCGTTGAAATGCATAAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCACTCATCACAAATGCGTTGAAAGATGAAGACGACAAATCCATATCTTTTGAGACATGA 1926 0.3972 MSLNLIWFWTLLTFLFLFLLMTNSQSENVRKVLVTFMHKLEPPHQNSISGWNLTSDPCTHNWQGVTCYTSNQYIKSIVLDNLNFTGVLDATSLCIANNLQFLSLNNNYLHGFISKDIKNCKSLTHLLLSGNEFSGNLPLSIPQLRNLKRLHVSNNHFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEAFNVSNNNLRGPVPDVEGFFSADSFYGNPNLCGKPISNSSCPSPPPRPPPPVVKKDKSKNAFIDDLLIYSGYIVLGLIFIIFLIFKLVKKLKTKDKEKVLNHGEKKDMSQDISFVGGGEKLSEILNSNGSKSWFNGLGIKSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDYGVLLAVKRIKDWGISKHDFERRMNLIAQVKHPLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLGVAVKIAEAMAYMHEELGESGIAHGNLKSSNILFDKKMNPQISEYGLMVAENRGVISHRKSLGNRNMSAAATFRGDIYAYGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRCLNSQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDDKSISFET 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02056 641 Gene3D Ribonuclease Inhibitor 191 236 IPR032675 -
Vifa2g02056 641 PANTHER OS05G0588300 PROTEIN 11 630 - -
Vifa2g02056 641 ProSiteProfiles Protein kinase domain profile. 368 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02056 641 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Vifa2g02056 641 SUPERFAMILY Protein kinase-like (PK-like) 372 623 IPR011009 -
Vifa2g02056 641 FunFam Nuclear pore complex protein NUP107 26 186 - -
Vifa2g02056 641 Gene3D Transferase(Phosphotransferase) domain 1 443 640 - -
Vifa2g02056 641 Gene3D Phosphorylase Kinase; domain 1 340 442 - -
Vifa2g02056 641 Gene3D Ribonuclease Inhibitor 26 190 IPR032675 -
Vifa2g02056 641 Pfam Protein kinase domain 374 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02056 641 SUPERFAMILY L domain-like 26 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02056 Vifa-Chr2 533438901 533440935 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02056 44 632 Receptor kinase-like Gene Family AT2G36570 34.112 6.99e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g02056 Pkinase 2.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02056 - - pvu:PHAVU_009G180700g 790.801