Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02051 ATGCCTCCACATATCCGTCGACCTCCAACCCACCGCCATCCCTTATCCTTCCCCGCCGTACATCCCTGCGAATCCATATCTACTACCACCATCCTCACTTCCTTAATCACTCTCTCCCAAAACATATCCACTTTCCAACCAAACTCCTTCCCCACTCAAAAACGAAACACTCGAGAAACAAAACGCCAAATCCAAATTCTCCTCATATTCTTCCGAGAACTCCAATCCCATGCCTCTCCCATCCCAAAACCAATCATTCCCATCCTCTCCAACCTTCACTTCACCCTCCAAAAAATCCATTTCTTATTTCAAGACTGTTCCCTCCAAAACGCACGCCTTTGGTTACTCATCAAATCCCAATTCATAGCCACACAGTTTCACCTCTTCATCCATTCCGTCGCAGAATCTCTCGACGCGTTACCACTCCACCTCATCAACATATGCGACGAGGTTAAAGAGGTAATTCAATTACTCACCAAACAAAACAAAACAATCAATCTCGTGCTGGACCATAACGACCAACGCCAAACCAAACACACCATTTCGATTCTTAATCAATTCGAAAAAGGAACCGAACCAGACGTGGATTCCGTCAAACAGTTACTAGATTACCTCGAAATCAAAACTTGGTTAGATTGCAACGAAGAGATCAAATTCCTCCAATACGAAATAGAATTTGAACATGAACATGAACATGAACATGAACAAGAACCAGAACCAGAATCAGAGAAAGAGATTTCTCTACTGAGTGGTTTGAAATGTTTTCTATGCTATTGTCGTGTAGTTCTTTTCGAAACTCTAGATTTTCAATCGATAACCCGTAACAGATCCGAAAGCAGGTGCAGGCGCAGTACAGAGATGTCAAGCTGCGTTGCACCAGATGATTACCGCTGTCCGATTTCACTCGAGTTAATGACAGATCCTGTAACCGTTTCCACTGGCCAAACATACAACAGAGCTTCCATTCAACAATGGTTTAACTCCGGAAACATAACCTGTCCGAAAACAGGTGAAAAGCTCGTTACCATAGAGGTTTTCCCCAACACAGCTCTCAAAACAATTATCCAAAAATTCTGTTACGATAACAGAATTTCAGTTTCACGAACTAAATCACAATCACACATCGGCGTAGCTGTAACCACTGCTAATCCCGGTAGTCCTGCAGCAGCACACGCGATACAGTTCGCGTCATGGTCACTCGCTCAGAGACTAGTTTTCGGAACAGATGAACAGAAAAACAAAGCAGCTTATGAGATTGGATTACTCGCGAAATCAAACGTTTTCAATACTGCTTGTTTGATTGAAATGGGAACTGTGCCACCGTTGATTGATCTTGTTTTAGCTTCAGCAACGCAAGAGAACGCGATTTTTGCTCTTTTGAAGCTTTCAAAGCATAGTAATGGCCGCGAAGTTATAATGGAGAGTCGAGGCTTAGATTCTATAGTTACTGTTGTCAGACAAGGTTATAGTTTGGAAGCTCGCAGAATTGCTGCTGGTATAGTATTTTATCTCACTTCAGTGAAGGAGTATAGAAAACTAATAGGTGAAAATTCAAAGGTTGTTTCTGGTTTAGTGGAGTTGATAAAGAAAGGAACAATTCGAGGAAAAAAGACCGCAGTAGATGCGATTTTCGGGTTGTTATTGCTTCCTAAGAATCATACTAAGGTTCTTGCTTCTGGTGTTGTTCCTGCTATAGTTAGTGTTTTGTGTTCTTGGGAGAAATCTTATGTTGTTAATGATTGTTTGGCGGTTTTGGTAGCTTTGGCGGAGAATGTGGACGGTTCCCGTGCTGTATTAGAAGCTTCGGGTTTATCTTTGGTGGTTGGGATTTTGCAATCTGCAACTTCGCGTGCTGAGAAGGAATACTGTGTTTCCATTTTGGTTTCGCTGTGTGCTAATATTGGTGATGAGATTGTTAGTGTTCTGGTGAAAGATGGTTCTGTAGTTATGCCTTTGCTTTATGGGATTCTTACGGATGGTACTCCTCTAGCGGAGAAGAAAGCACGGAAACTTATCAGTGTGTTACAAGAATTTGATGAGAAGAAAACTTTGGGCACTTCTGTTTTGCACCAAAGATTGCTTCAGTTGAATTAG 2094 0.4202 MPPHIRRPPTHRHPLSFPAVHPCESISTTTILTSLITLSQNISTFQPNSFPTQKRNTRETKRQIQILLIFFRELQSHASPIPKPIIPILSNLHFTLQKIHFLFQDCSLQNARLWLLIKSQFIATQFHLFIHSVAESLDALPLHLINICDEVKEVIQLLTKQNKTINLVLDHNDQRQTKHTISILNQFEKGTEPDVDSVKQLLDYLEIKTWLDCNEEIKFLQYEIEFEHEHEHEHEQEPEPESEKEISLLSGLKCFLCYCRVVLFETLDFQSITRNRSESRCRRSTEMSSCVAPDDYRCPISLELMTDPVTVSTGQTYNRASIQQWFNSGNITCPKTGEKLVTIEVFPNTALKTIIQKFCYDNRISVSRTKSQSHIGVAVTTANPGSPAAAHAIQFASWSLAQRLVFGTDEQKNKAAYEIGLLAKSNVFNTACLIEMGTVPPLIDLVLASATQENAIFALLKLSKHSNGREVIMESRGLDSIVTVVRQGYSLEARRIAAGIVFYLTSVKEYRKLIGENSKVVSGLVELIKKGTIRGKKTAVDAIFGLLLLPKNHTKVLASGVVPAIVSVLCSWEKSYVVNDCLAVLVALAENVDGSRAVLEASGLSLVVGILQSATSRAEKEYCVSILVSLCANIGDEIVSVLVKDGSVVMPLLYGILTDGTPLAEKKARKLISVLQEFDEKKTLGTSVLHQRLLQLN 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02051 697 ProSiteProfiles U-box domain profile. 291 365 IPR003613 GO:0004842|GO:0016567
Vifa2g02051 697 Pfam U-box domain 292 363 IPR003613 GO:0004842|GO:0016567
Vifa2g02051 697 SUPERFAMILY ARM repeat 408 675 IPR016024 -
Vifa2g02051 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 374 IPR013083 -
Vifa2g02051 697 PANTHER U BOX DOMAIN-CONTAINING 60 675 - -
Vifa2g02051 697 Gene3D - 389 687 IPR011989 -
Vifa2g02051 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 477 IPR000225 GO:0005515
Vifa2g02051 697 SUPERFAMILY RING/U-box 282 365 - -
Vifa2g02051 697 SMART Ubox_2 295 358 IPR003613 GO:0004842|GO:0016567
Vifa2g02051 697 FunFam RING-type E3 ubiquitin transferase 292 364 - -
Vifa2g02051 697 CDD RING-Ubox_PUB 293 340 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02051 Vifa-Chr2 532500561 532502654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02051 7 683 U-box Gene Family AT1G10560 37.106 2.10e-140 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02051 - - gmx:100810963 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02051 2 532500561 532502654 Vifa2g02051 2 532500561 532502654 ECH