Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02049 ATGGTAATGGAAATTGTCATTTCTTTGATAATCTTATTCGTTGGGATTGGTATTCTGGTTTCTATCCATTTCTGCATAGTTGGTAGAGCTTTTACAAGGGATAATAATAGTGCAGACACTCAAGTCCAGAGTAGTAGTAGTACTAGTACTAGCAGAACAACAAAAGGAATGTTTGGTGACAATATTGGTGACTTGAAGAACCTTCCTTGCTTTGATTATGTGGAACAAGAGAAAGGAAACAATAATAATCTTGTCGACTGTGCTGTTTGCTTGGAGAGTTTTAAAGTTGGTGATGCTTGTAGGTTGTTGCCTAATTGCAGACACAGTTTTCATGTTCAGTGTATAGATTTGTGGATTCTCAAGAAACCGTTTTGTCCGATTTGTAGAACATGGGTTCATTCAAGAGTTGTGAGAGAAGAAAGTGTTGTTTCGGATTCTGATATTGTAGAAGTTGAAATACCATAG 465 0.3656 MVMEIVISLIILFVGIGILVSIHFCIVGRAFTRDNNSADTQVQSSSSTSTSRTTKGMFGDNIGDLKNLPCFDYVEQEKGNNNNLVDCAVCLESFKVGDACRLLPNCRHSFHVQCIDLWILKKPFCPICRTWVHSRVVREESVVSDSDIVEVEIP 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02049 154 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vifa2g02049 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 139 - -
Vifa2g02049 154 Pfam Ring finger domain 86 129 IPR001841 -
Vifa2g02049 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 137 IPR013083 -
Vifa2g02049 154 FunFam RING-H2 finger protein ATL2K 60 135 - -
Vifa2g02049 154 SUPERFAMILY RING/U-box 73 134 - -
Vifa2g02049 154 SMART ring_2 87 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02049 Vifa-Chr2 532488366 532488830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02049 31 154 Rapid Response to Elicitors AT3G16720 35.338 3.74e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02049 - - gmx:102662620 162.925