LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g02049	ATGGTAATGGAAATTGTCATTTCTTTGATAATCTTATTCGTTGGGATTGGTATTCTGGTTTCTATCCATTTCTGCATAGTTGGTAGAGCTTTTACAAGGGATAATAATAGTGCAGACACTCAAGTCCAGAGTAGTAGTAGTACTAGTACTAGCAGAACAACAAAAGGAATGTTTGGTGACAATATTGGTGACTTGAAGAACCTTCCTTGCTTTGATTATGTGGAACAAGAGAAAGGAAACAATAATAATCTTGTCGACTGTGCTGTTTGCTTGGAGAGTTTTAAAGTTGGTGATGCTTGTAGGTTGTTGCCTAATTGCAGACACAGTTTTCATGTTCAGTGTATAGATTTGTGGATTCTCAAGAAACCGTTTTGTCCGATTTGTAGAACATGGGTTCATTCAAGAGTTGTGAGAGAAGAAAGTGTTGTTTCGGATTCTGATATTGTAGAAGTTGAAATACCATAG	465	0.3656	MVMEIVISLIILFVGIGILVSIHFCIVGRAFTRDNNSADTQVQSSSSTSTSRTTKGMFGDNIGDLKNLPCFDYVEQEKGNNNNLVDCAVCLESFKVGDACRLLPNCRHSFHVQCIDLWILKKPFCPICRTWVHSRVVREESVVSDSDIVEVEIP	154

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g02049	154	ProSiteProfiles	Zinc finger RING-type profile.	87	129	IPR001841	-
	Vifa2g02049	154	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	1	139	-	-
	Vifa2g02049	154	Pfam	Ring finger domain	86	129	IPR001841	-
	Vifa2g02049	154	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	61	137	IPR013083	-
	Vifa2g02049	154	FunFam	RING-H2 finger protein ATL2K	60	135	-	-
	Vifa2g02049	154	SUPERFAMILY	RING/U-box	73	134	-	-
	Vifa2g02049	154	SMART	ring_2	87	128	IPR001841	-

Showing 1 to 7 of 7 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g02049	Vifa-Chr2	532488366	532488830	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g02049	31	154	Rapid Response to Elicitors	AT3G16720	35.338	3.74e-17	74.7

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g02049	-		-	gmx:102662620	162.925

Showing 1 to 1 of 1 entries