Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02048 ATGAAGGAAAAGAATGATGGGTTTATGAGAGCTGATCAAATTGATCTCAAGAACATAGATGAACAACTTGAGAGACACCTCAACAAAGCATTGCCTGTAGCTCAGAATGATGACTCAAACTCTGGTGGTGATGCTGCTGTCTTCAATGAGAATCAAAGACAAGAGTGGGAAATTGATCCTTCTAACCTCATCATCAAGAGTGTCATAGCTCGTGGCACTTTTGGTACTGTTCACCGTGGTGTCTATGATGCTCAAGATGTTGCTGTTAAAATACTGGACTGGGGTGAAGAAGGACTCAGGACAGAAGCTGAAATTGCTGCACTCAGGTCTGCCTTCACGCAGGAAGTTGTTGTTTGGCATAAACTGGATCATCCTAATGTCACAAAGTTTATAGGGGCAACAATGGGGTCATCTGAATTGCAGATACAAAGTGACAATGGTGTGATTAGCATGCCTAGCAATATCTGTTGTGTGGTTGTAGAGTATCTTCCCGGAGGTGCACTTAAATCTTTCTTAATAAAGAATAGGAGGAGGAAATTAGCTTTTAAGATCGTCGTCCAGCTAGCACTTGATATGGCTAGAGGGCTGAATTATCTTCACTCCCAGAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAAACACGGACAGTTAAAATTGGTGATTTTGGAGTTGCGCGTATTGAAGCATTGAATCCTAGTGACATGACCGGGGAGACTGGAACACTTGGTTACATGGCTCCTGAGGTTTTAAACGGAAACCCTTATAACAGGAAATGTGATGTATATAGTTTTGGCATCTGTTTATGGGAAATATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCTGAGATTACATCAGCCGTTGTTCGCCAGAATGTTAGACCCGAAATACCAAGATGCTGTCCAAGTTCTTTAGCAAATGTAATGAAAAGATGCTGGGATGCAAATCCCGATAAGCGGCCTGAAATGGATGAGGTAGTTGCCATGCTGGAGGCTATTGACACATCCAAAGGTGGAGGTACGATCACTATTGATCAGCAACATGGTTGTCTTTGCTTCCGTAAGCGTCGAGGACCTTGA 1101 0.426 MKEKNDGFMRADQIDLKNIDEQLERHLNKALPVAQNDDSNSGGDAAVFNENQRQEWEIDPSNLIIKSVIARGTFGTVHRGVYDAQDVAVKILDWGEEGLRTEAEIAALRSAFTQEVVVWHKLDHPNVTKFIGATMGSSELQIQSDNGVISMPSNICCVVVEYLPGGALKSFLIKNRRRKLAFKIVVQLALDMARGLNYLHSQKIVHRDVKTENMLLDKTRTVKIGDFGVARIEALNPSDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNVRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVAMLEAIDTSKGGGTITIDQQHGCLCFRKRRGP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02048 366 FunFam Kinase suppressor of Ras 1 52 146 - -
Vifa2g02048 366 Pfam Protein tyrosine and serine/threonine kinase 65 337 IPR001245 GO:0004672|GO:0006468
Vifa2g02048 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vifa2g02048 366 Gene3D Transferase(Phosphotransferase) domain 1 163 356 - -
Vifa2g02048 366 SMART serkin_6 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02048 366 SUPERFAMILY Protein kinase-like (PK-like) 50 337 IPR011009 -
Vifa2g02048 366 Gene3D Phosphorylase Kinase; domain 1 51 145 - -
Vifa2g02048 366 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02048 366 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 47 340 - -
Vifa2g02048 366 CDD STKc_MAP3K-like 69 337 - -
Vifa2g02048 366 FunFam Serine/threonine-protein kinase HT1 163 348 - -
Vifa2g02048 366 PRINTS Tyrosine kinase catalytic domain signature 198 216 IPR001245 GO:0004672|GO:0006468
Vifa2g02048 366 PRINTS Tyrosine kinase catalytic domain signature 308 330 IPR001245 GO:0004672|GO:0006468
Vifa2g02048 366 PRINTS Tyrosine kinase catalytic domain signature 264 286 IPR001245 GO:0004672|GO:0006468
Vifa2g02048 366 PRINTS Tyrosine kinase catalytic domain signature 160 173 IPR001245 GO:0004672|GO:0006468
Vifa2g02048 366 PIRSF ILK 11 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02048 Vifa-Chr2 532476575 532478900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02048 4 366 MAP Kinase Kinase Kinase AT3G22750 64.560 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa2g02048 PK_Tyr_Ser-Thr 3.4e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02048 - - mtr:11415349 653.284