Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02040 ATGAAGAATTTGAACTGTTACAAACAAGTTTCTAAGAATGGAAAACCTGGGAGGAGGTTTTCACTTGGGGAGTATCAGAGAGCAGTTTCCTGGTCTAAATATTTGGTGACACCTGGTGCTGCTATAAAGGGAGGTGAAGAAGAAGAATGGAGTGCTGATATGTCTCAGTTGTTTATTGGATCTAAATTTGCTTCTGGGAGACATAGTAGAATCTATAGAGGTGTTTATAAGCAAATGGATGTTGCTATTAAGCTTGTGAGTCAGCCTGAAGAAGATGAGGATTTGGCTGCTTTTCTTGAGAAGCAGTTTACTTCTGAGGTTGGTTTGCTTTTGAGGTTGCGTCATCCAAATATCCTCACTTTCATTGCTGCTTGCAAGAAACCACCGGTTTTCTGTATAATCACCGAATATTTAGCCGGTGGTTCATTGAGAAAATACCTTCATCAACAAGAACCACATTCAGTTCCACACGAACTCGTTCTGAAATTAGCACTAGACATTGCGAGGGGAATGGAATATCTTCATTCCGAAGGGATACTTCACAGAGATCTCAAATCAGAGAATCTTCTCTTAGACGAAGATATGTGTGTAAAAGTAGCTGACTTTGGTATCTCATGTTTAGAATCTCAGTGTGGAAGTGCGAAAGGATTTACCGGAACGTACCGTTGGATGGCTCCAGAAATGATCAAAGAAAAACATCATACTAAAAAAGTCGATGTTTATAGTTTCGGTATAGTTCTTTGGGAGCTTTTAACCGGATTGACTCCGTTCGATAACATGACGCCAGAACAAGCAGCATTTGCAGTTTCATACAAGAATGCAAGACCACCACTACCATCTGAATGTCCTTGGGCATTTAGTAACCTGATCAATAGATGTTGGTCAAGCAATCCAAAGAAAAGGCCACATTTTGTCGAGATCGTTTCAATATTAGAGCGATTCGCCAAGTCACTTGAACGAGATTCAGAATTTTTCTCGACTTACAAACCACGACCTTCTAATACAATTCTGGGTTGCTTTCCTAAATGCAAGGCTCGCCAAAAATCTGTTACTTGCAAAGCAAAGTAG 1068 0.4017 MKNLNCYKQVSKNGKPGRRFSLGEYQRAVSWSKYLVTPGAAIKGGEEEEWSADMSQLFIGSKFASGRHSRIYRGVYKQMDVAIKLVSQPEEDEDLAAFLEKQFTSEVGLLLRLRHPNILTFIAACKKPPVFCIITEYLAGGSLRKYLHQQEPHSVPHELVLKLALDIARGMEYLHSEGILHRDLKSENLLLDEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGLTPFDNMTPEQAAFAVSYKNARPPLPSECPWAFSNLINRCWSSNPKKRPHFVEIVSILERFAKSLERDSEFFSTYKPRPSNTILGCFPKCKARQKSVTCKAK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02040 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vifa2g02040 355 Pfam Protein tyrosine and serine/threonine kinase 60 311 IPR001245 GO:0004672|GO:0006468
Vifa2g02040 355 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vifa2g02040 355 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vifa2g02040 355 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vifa2g02040 355 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Vifa2g02040 355 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vifa2g02040 355 Gene3D Phosphorylase Kinase; domain 1 46 138 - -
Vifa2g02040 355 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Vifa2g02040 355 CDD STKc_MAP3K-like 64 311 - -
Vifa2g02040 355 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Vifa2g02040 355 Gene3D Transferase(Phosphotransferase) domain 1 140 335 - -
Vifa2g02040 355 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02040 355 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 318 - -
Vifa2g02040 355 ProSiteProfiles Protein kinase domain profile. 57 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02040 Vifa-Chr2 531120145 531122483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02040 1 314 MAP Kinase Kinase Kinase AT1G62400 60.815 1.47e-138 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa2g02040 PK_Tyr_Ser-Thr 4.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02040 - - gmx:100807757 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02040 2 531120145 531122483 Vifa2g02040 2 531120145 531122483 PCT