Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02032 ATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGGCCAAACTCCATGATAGATCAAAGGAGGCTAAGACCACCACATGACCTATCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACTTGTAGAAGGTATTGGACTAAAGGTGGAACCCTAAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAGAAAGTTTCATCCAAAAAACCTAATGATGTTCACCATTTAGCTAATAGTAATAATATTCAAAATCATCAAAACCAACCACAACAAGGATCTTCTTATTCATACCATCATCATCACCACAACAACAACAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTGCAATTCTCTCACCTTAGTAACTTACTCGGGAGTACTAGTTCAAATGCATTAGGAAACCCTAATTTCAACGTCGGCATGCTTGAGAATCCTAGGCCTATTGATTTCATGATGGAGAGTAAACTAGAAGGCATAATTGGAAGTAGTTCTAGAAACTTTGATAACTTTTTTGGAAACAATGATCACATGAGTATGAACATGGGTGTTGGAGATATGATGAATGGACAAAATCAAAATGTGCTTCAATTGCAACAGAATTTTCATTCTACATTTGGTGGCATGTCATCATTTGATGGAAGCAACAACAATGGAGGTTATTTAATGGATTCTTGTCAAAGACTCATGCTTCCATATGATGCTCATGATGAGGATCATAGTGCTTCTTCAATTGATGTGAAACCAAACCCTAAATTACTCTCACTTGAATGGCAACAAGATCAAGGTTGCTCTGATGCTGGATATGGATCATGGAGTGGCATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTGA 948 0.3808 MDSSSPLSGDMLTCSRPNSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSSKKPNDVHHLANSNNIQNHQNQPQQGSSYSYHHHHHNNNNPKDLQLSFPDVQFSHLSNLLGSTSSNALGNPNFNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNFFGNNDHMSMNMGVGDMMNGQNQNVLQLQQNFHSTFGGMSSFDGSNNNGGYLMDSCQRLMLPYDAHDEDHSASSIDVKPNPKLLSLEWQQDQGCSDAGYGSWSGMMNGYGSSTTNPLING 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02032 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 210 IPR045174 GO:0003700|GO:0006355
Vifa2g02032 315 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Vifa2g02032 315 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Vifa2g02032 315 MobiDBLite consensus disorder prediction 96 124 - -
Vifa2g02032 315 MobiDBLite consensus disorder prediction 79 136 - -
Vifa2g02032 315 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02032 Vifa-Chr2 528396599 528397546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02032 1 313 C2C2-Dof Transcription Factor Family AT5G62940 41.598 3.54e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa2g02032 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02032 - - gmx:100806697 390.578